BtaEX0029604 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000004194 | RALGDS
Description
Bos taurus ral guanine nucleotide dissociation stimulator (RALGDS), mRNA. [Source:RefSeq mRNA;Acc:NM_001101978]
Coordinates
chr11:103139494-103176381:-
Coord C1 exon
chr11:103176264-103176381
Coord A exon
chr11:103140891-103141068
Coord C2 exon
chr11:103139494-103139604
Length
178 bp
Sequences
Splice sites
3' ss Seq
GTTCCCTGCTGACTTCCCAGAAA
3' ss Score
6.47
5' ss Seq
GAGGTAAGA
5' ss Score
10.06
Exon sequences
Seq C1 exon
CATCCGGGCGCCCCCCTGCGCCGCGCGCGGGCCGAGGCGAGCGGCCTCTGATAGCCCGGAGCCCCGCCCTGGGGCCGGCGATGTGCTGCCGGGGCTGAGAATGATGGTAGATTGCCAG
Seq A exon
AAACGCCTGGCTCTCTCTCCGGAGGAGGCAAAGGGCCAGGAGCCCCGGCATGTTGCCCTGGCTTTCCCGTTGGTGCGATGCCCGGAGTGGGAGGGCGGCCTCAGGTCAGAGGAAGTGGATTTCCGGAGGATGGCTTTCCAGGCCTCCCGGAACCCTCCCAGAGCCCTGGAGGTAGGAG
Seq C2 exon
AGCTCCACGCAGGAGATCGGCGAGGAGCTGGTCAACGGGGTCATCTACTCCATTTCCCTGCGCAAGATCCAGGTGCACCACGGCGCCAGCAAGGGCCAGCGCTGGCTCGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004194_MULTIEX1-4/6=C1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGCGGCCTCTGATAGCCC
R:
CGTGGTGCACCTGGATCTTG
Band lengths:
162-340
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development