BtaEX0029900 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000023891 | RBM20
Description
RNA binding motif protein 20 [Source:HGNC Symbol;Acc:HGNC:27424]
Coordinates
chr26:31654986-31657570:+
Coord C1 exon
chr26:31654986-31655065
Coord A exon
chr26:31656701-31656820
Coord C2 exon
chr26:31656952-31657570
Length
120 bp
Sequences
Splice sites
3' ss Seq
TTATTCATCCCCATTCCCAGGAG
3' ss Score
7.31
5' ss Seq
GTGGTAAGA
5' ss Score
8.24
Exon sequences
Seq C1 exon
AAACCTGGGAAGACCGTGGCTGCCATCATCCAGGACATCCATTCCCAGAGGGAGAGGGACATGTTCCGGGAAGCAGAAAG
Seq A exon
GAGCATTATGAGGAAAGAAGCAGAGGGCAGCCAGCATTGCGCCCAGGGAAAATCCCTCCCTGAGGGCGGAGGGAGGCAGAGCTTGCTCCAGGACCACTCTGGGCGCTGTGCACAGTGGTG
Seq C2 exon
GTACGCCCCAGAAAGGCCGCGATCTCGAAGTCCAGTGAGCCGGTCGCTGTCCCCGAGGTCCCACACTCCGAGCTTCACCTCCTGCAGCTCTTCTCACAGCCCCCCGGGCCCTTCCCGGGCCGACTGGGGCAACGGCCGGGACTCGTGGGAGCACTCTCCCTACGCCAGGAGGGAGAATGGGGAGGACAAGAGGGATAGGATGGACACGTGGGCGCATGATCGCAAGCACTACCCCCGGCAACTAGACAAAGCCGAGTTAGACGAGCGACTGGAAGTGGGGAGGGGCTACAGAGAAAAGCACCCGAGGTCTGGGTCCCCCAACCCGCTCCACTCCGCGTCCGGCTACAAAAGCCGGGAAGACGGCTACCACCGGAAAGAGTCCAAGGGCAAATCGGACAAGTACCTGAAGCCGCAGCAGGATGCTCCGGGGAGGTCCAGGAGGAAAGATGAGGCCAGGCTGCGAGAAGGCAGGCACCCCCACGCGGACGACGCGGGCAGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000023891_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.519 A=0.780 C2=0.986
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSBTAT00000046225fB5799
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGACATCCATTCCCAGAGGG
R:
CCCTCTTGTCCTCCCCATTCT
Band lengths:
243-363
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development