BtaEX0031179 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000012621 | RTN4RL2
Description
reticulon 4 receptor-like 2 [Source:HGNC Symbol;Acc:HGNC:23053]
Coordinates
chr15:82033375-82036896:+
Coord C1 exon
chr15:82033375-82033878
Coord A exon
chr15:82035516-82035734
Coord C2 exon
chr15:82036796-82036896
Length
219 bp
Sequences
Splice sites
3' ss Seq
TCCTCCCACTGTTTCCCCAGGAA
3' ss Score
10.15
5' ss Seq
CAAGTAAGT
5' ss Score
10.08
Exon sequences
Seq C1 exon
CTAGCGCCTATTTGCTCGCAGGTCCCCCGGCCTGCGTCCTGCTGCTCCTCCTGGCCGCGGCCCCCGCCGCCGCCCGCTGCCCCATGCTCTGCACCTGCTACCCGGCGCCGCCCACCGTGAGCTGCCAGGCCAACAACTTCTCCGCGGTGCCGCGGGCCCTGCCGCCCGGCACGCAGCGCCTCTTCCTGCAGAACAACCTGATCGGCGCGCTGCGGCCCGGCTCCTTCGGGCCCAGCCTGCTCACCCTGTGGCTCTTCTCCAACAACCTCTCGGCCATCTACCCGGGCACCTTCCGCCACCTGCAGGCGCTCGAGGAGCTGGACCTGGGCGACAACCGGCACCTGCGCTCCCTGGAGCCCGACACCTTCCAGGGCCTGGAGCGGCTGCAGTCGCTGCACCTCTACCGCTGCCAGCTCAGCAGCCTGCCCGGCACCATCTTCCGCGGCCTGGTCAGCCTGCAGTACCTCTACCTCCAGGAGAACAGCCTGGTCCACCTACAG
Seq A exon
GAAGCAATAGCAGGCCCTGCAAACCATCCGAGGAGAAAAGCCTCCCTCTCAGTTTCAGGCCTCTGGATTTCCAGCTGCGACCCTCTCCCCACACCCACCTGGACGGCCCTTCTCCTTCCTCACCCCGGGCTGGGGCCTGACTGCCCAGCACCGTGCGCATCTGATGCTGATAGTGACAGTAACGATAGCAATAGTAATCCAGCATTTATTGAGCACCAA
Seq C2 exon
CCCTGTTTGGGGATTGTTCACACCTCCTTACAGATAAGGCAGCTGAGACCGAGGGTCCCAAAGACTTTGTCCCAAAGTCTCGTAAACACTGTCCCAGTGCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000012621-'0-1,'0-0,1-1
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.247 C2=NA
Domain overlap (PFAM):
C1:
PF138551=LRR_8=WD(100=35.7)
A:
NO
C2:
NA
Main Inclusion Isoform:
ENSBTAT00000016755fB6087
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTCTCCAACAACCTCTCGGC
R:
TCGGTCTCAGCTGCCTTATCT
Band lengths:
299-518
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development