BtaEX0031458 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000015553 | SCAI
Description
suppressor of cancer cell invasion [Source:HGNC Symbol;Acc:HGNC:26709]
Coordinates
chr11:95966675-95980272:-
Coord C1 exon
chr11:95980141-95980272
Coord A exon
chr11:95979592-95979742
Coord C2 exon
chr11:95966675-95966770
Length
151 bp
Sequences
Splice sites
3' ss Seq
TTATCCTTTCTTTTTCTTAGGAT
3' ss Score
11.23
5' ss Seq
CAGGTAAAT
5' ss Score
8.76
Exon sequences
Seq C1 exon
AACTGAATTTGCTCTTAAAGAAATCATGTCCTCTGGAGGTGCTGAAGATGACATCCCACAGGGAGAGAGGAAAACAGTGACAGATTTTTGTTACCTTCTGGATAAATCTAAGCAACTGTTCAATGGGTTAAG
Seq A exon
GATAAAGTATCTAAAGTAATGATGACTAAAGTAATGATGGAGTTTTTCAAGACAGTGTCTTTCTTTAGTTGTGCATACCCTGACTAGTAGCAGAAGCTATATGCATTTTTGTCAAAATGCGACTTTAATTGTGTATTCTTGAGGGTGGCAG
Seq C2 exon
AGATTTGCCACAATATGGACAGAAGCAGTGGCAGTCCTATTTTGGAAGAACTTTTGATGTTTACACCAAACTCTGGAAATTCCAGCAGCAGCATCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000015553-'5-3,'5-2,6-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.098 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF120703=DUF3550=PU(2.8=31.1)
A:
NO
C2:
PF120703=DUF3550=FE(6.5=100)
Main Inclusion Isoform:
ENSBTAT00000020665fB6144
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTCTTAAAGAAATCATGTCCTCTGG
R:
CGATGCTGCTGCTGGAATTTC
Band lengths:
218-369
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development