BtaEX0031617 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000016223 | SCRN1
Description
Bos taurus secernin 1 (SCRN1), mRNA. [Source:RefSeq mRNA;Acc:NM_001110803]
Coordinates
chr4:66785266-66807359:+
Coord C1 exon
chr4:66785266-66785615
Coord A exon
chr4:66786032-66786188
Coord C2 exon
chr4:66807200-66807359
Length
157 bp
Sequences
Splice sites
3' ss Seq
AACTCTTCTCGCTCGCCCAGGCC
3' ss Score
7.8
5' ss Seq
TCGGTAGGT
5' ss Score
9.09
Exon sequences
Seq C1 exon
CCTCTGAGCCGTCCCTTCTGCTCCCAGGCGCTCTCCGGAATCAGGCCTAGCGTGGGTGCGGCGCGGCCCGGCCGGGGGCCAGGGTGTGAGGAAGAAGGCGGCGGCGGCGGCGGCGGCAGGGAGGGTGGGCCCCGCGGTCACGTGAGCCCGGCCAGCTGTTAGCTGGGGGCGGTGGCCCGGAGCTTTGGGAGTCTGGGGAGGGGGAAGCGCCCGACGGCCGCCTGCGACGCTGCAGCTGCAGCCCCCGACGTCGCCACTGTAATCGCCGCAGCCGCAGCACGCGCACGCTCGCCGGCCGCGCATCGGCACCGCAGAGCAGAGCCCAGAGCCCGGAGCCCGCCGCCCCCCAG
Seq A exon
GCCGCTTTTCCTGTGTTTCCGTTGCCTGCTATCCCAGTTGCTGGCCCGCTGGGGTGTGTACCCCGTGCCACCCCCGCCCTCGCCACCCCCTCGCTCCGGGGGATTCCGGCTCGCACTGGCGCATCACTGGTGGCCGAGCGAGCCTGGCACCTTCTCG
Seq C2 exon
GATGGCTGTAGCTCCTCCAAGTTACTGCTTTGTGGCCTTCCCGCCACGTGCAAAGGATGGTCTGGTGGTATTTGGGAAAAATTCAGCTCGGCCCAGGGATGAAGTACAAGAGGTTGTGTATTTCTCAGCTGCTGATCATGAACCTGAGAGCAAGGTTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016223_MULTIEX1-1/2=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.019
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0357710=Peptidase_C69=PU(13.0=52.8)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGCTTTGGGAGTCTGGGGAG
R:
CCCAAATACCACCAGACCATCC
Band lengths:
247-404
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development