BtaEX0031670 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000001352 | SDCCAG3
Description
Bos taurus serologically defined colon cancer antigen 3 (SDCCAG3), mRNA. [Source:RefSeq mRNA;Acc:NM_001046140]
Coordinates
chr11:103910385-103912223:-
Coord C1 exon
chr11:103912084-103912223
Coord A exon
chr11:103911739-103911821
Coord C2 exon
chr11:103910385-103911381
Length
83 bp
Sequences
Splice sites
3' ss Seq
AAACACACGAACTTGAACAGGGC
3' ss Score
0.34
5' ss Seq
ACAGTGAGG
5' ss Score
3.44
Exon sequences
Seq C1 exon
GCCCAGGTCTCTGACTTCAAGCGTGAGAACGAAGCCCTGCGGTCAGGCCAGGGCGCCAGCCTGACGGTGGTGAAGCAGAACACGGACGTGGCCCTGCAGAACCTCCGTGTGGTCATGAACAATGCTCATGCCTCCATTAA
Seq A exon
GGCTCCCGGGAGGCGTCCTGGGCTGGCGTCCTCTGTCTCCCTTGAGCGCAGCGGGCAGCGGTGTCCAGCCTCAGCCACAGACA
Seq C2 exon
GCAGCTGGTTTCTGGAGCTGAAACGTTGAATCTCGTTGCTGAAATCCTTAAATCTATAGACAGAATTTCTGAGATTAAAGACCAAGGGGAGGAGTCGTGAGAGCCACGGAGGTGCTTCCAGCTCCCAGCTCTGTTTACATCCTGAAACCACTTCCCGACGGATTCCAAGCTGCCGCGGCGTCTCTGAGTGTGCAGACTTCACCCACAGTAAAGCTTTATCCCAAGACACTAACTTCGTGACGTGCGGCAGTGTTATTAGCCACACACGGGGCCGCACCTGCGCTTCTGCGTAGCCTTTCTAGCTGAGCTCCACACCGCCTCGTAGACGCTGATCATCTATTTGAAGGCAATTCTATAAAAGCCAGTGATTTTTTTTTTAAGTTAGTAAACGAAAGCAGCGGTTCTGTAGTGTTTCCGTCGTCACTGCAGCGCTCTAGCTGTAAGATGAGTTCCGTTGGCCGTCTTTCTTTTGTCAGTAGAGACACACTACGCGAGCCGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000001352_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.112 A=0.724 C2=0.083
Domain overlap (PFAM):
C1:
PF041569=IncA=PD(15.5=53.2),PF079026=Gp58=FE(26.6=100),PF131661=AAA_13=PD(28.3=87.2),PF0076914=ERM=FE(28.6=100),PF057016=WEMBL=FE(31.1=100),PF0026115=Tropomyosin=PD(17.1=42.6),PF149321=HAUS-augmin3=FE(30.9=100),PF107214=DUF2514=PD(23.2=48.9)
A:
PF079026=Gp58=PD(8.1=48.3),PF0076914=ERM=PD(8.1=44.8),PF057016=WEMBL=PD(1.4=6.9),PF149321=HAUS-augmin3=PD(4.0=20.7)
C2:
PF130941=CENP-Q=PD(14.7=88.2),PF131661=AAA_13=PD(5.1=23.5),PF0076914=ERM=PD(17.3=91.2)
Main Inclusion Isoform:
ENSBTAT00000055628fB6186
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGACGGTGGTGAAGCAGAAC
R:
CGACTCCTCCCCTTGGTCTTT
Band lengths:
177-260
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development