BtaEX0031867 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000021273 | SEMA4B
Description
sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4B [Source:HGNC Symbol;Acc:HGNC:10730]
Coordinates
chr21:22034230-22035978:+
Coord C1 exon
chr21:22034230-22034381
Coord A exon
chr21:22034601-22034767
Coord C2 exon
chr21:22035797-22035978
Length
167 bp
Sequences
Splice sites
3' ss Seq
AGTGGCTTCTCTTGTTGCAGAGC
3' ss Score
8.1
5' ss Seq
AATGTCTGT
5' ss Score
-1.87
Exon sequences
Seq C1 exon
ACCCAGCGTTTATGGCCTCAGCCTACATTCCCGAGAGCCTGGGCAGCTCGGAAGGGGACGATGACAAGATCTACTTCTTCTTCAGAGAGATTGGCCAGGAGTTGGAATTCTTTGAGAACACCATGGTGTCCCGCATCGCCCGTATCTGCAAG
Seq A exon
AGCCCAGGCTGAACGTGCAGCTCAGTAGTTGTGGTGCACGGGCTTAGTTGCCCTGCGACCTGTGGGACCTTCCTGGACCAGGGATCAAATCCGTGTCCCTTACATTGGCTGGCAGATTCATAACCACTGGACCACCAGAGAAGTCTTCTCTTCTTTTAAGTTAAAAT
Seq C2 exon
GGCGACGAAGGGGGCGGGCGCGTCCTGCAGCAGCGCTGGACGTCCTTCCTGAAGGCACAGCTGCTGTGCCTGCGGCCCGACGACGGCTTCCCGTTCAACGTGCTACAGGACATGTTCACGCTGACGCCCCGCCCCGAGGACTGGCCCGACACCCTCTTCTACGGGGTCTTCACATCCCAGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000021273-'9-10,'9-9,10-10
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0140314=Sema=FE(11.4=100)
A:
PF0140314=Sema=PD(0.5=25.0)
C2:
PF0140314=Sema=FE(13.7=100)
Main Inclusion Isoform:
ENSBTAT00000028346fB6230
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTCAGCCTACATTCCCGAGA
R:
GCGTGAACATGTCCTGTAGCA
Band lengths:
258-425
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development