BtaEX0032097 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000024822 | SETX
Description
senataxin [Source:HGNC Symbol;Acc:HGNC:445]
Coordinates
chr11:102386478-102389941:-
Coord C1 exon
chr11:102389834-102389941
Coord A exon
chr11:102387473-102387606
Coord C2 exon
chr11:102386478-102386665
Length
134 bp
Sequences
Splice sites
3' ss Seq
CTCGATGTTATTCACCTTAGACT
3' ss Score
5.35
5' ss Seq
ATGGTTAAT
5' ss Score
1.23
Exon sequences
Seq C1 exon
GCTGGACAGTCTTGTGAAGTTGAAACTCTTACTCCGCTCATCCATCGTTGCAACAAGCTTGTCCTCGTAGGAGACCCTAAGCAGCTCCCTCCCACAGTCATTTCCGTG
Seq A exon
ACTCTCAGCACCCGAAGCTTTAGACGCTAAGTGCATATTGCCTGGATGGATGGATGAAGAAATTGGTCTTTAAGAGGCTGGTTTACAATGACATTCATTTTTTCAAGCTGTGGGAGCGCAGCCCAGAAATAATG
Seq C2 exon
AAGGCACAGGACTACGGCTATGACCAGTCGATGATGGCCCGCTTCCACAAGCTCCTGGAGGAGAGTGTGGAGCACAACATGATTGGCAGGCTGCCCGTCTTACAGCTCACCATCCAGTACAGGATGCACCCGGACATATGCCTCTTTCCTTCTAGTTATATTTATGATGGAATCTTGAGAACAAATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000024822-'29-31,'29-30,30-31
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF130861=AAA_11=FE(12.2=100)
A:
NO
C2:
PF130871=AAA_12=PU(27.7=88.9)
Main Inclusion Isoform:
ENSBTAT00000042924fB6281
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGGACAGTCTTGTGAAGTTGA
R:
CATATGTCCGGGTGCATCCTG
Band lengths:
248-382
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development