BtaEX0032290 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000013857 | SH2D3A
Description
Bos taurus SH2 domain containing 3A (SH2D3A), mRNA. [Source:RefSeq mRNA;Acc:NM_001205669]
Coordinates
chr7:18946166-18950019:+
Coord C1 exon
chr7:18946166-18946244
Coord A exon
chr7:18947212-18947453
Coord C2 exon
chr7:18949883-18950019
Length
242 bp
Sequences
Splice sites
3' ss Seq
TTCCTCTCTCTCCTGCCCAGATA
3' ss Score
9.34
5' ss Seq
CAGGTATGT
5' ss Score
9.8
Exon sequences
Seq C1 exon
AGGGAGGGGTCGGGAGACGCAGAGCCTCAGGCTTCCGCCAGGCCCCAAGTTCTTGCGAGCTCCGCGGGTCCCGGCCCAG
Seq A exon
ATACCCAGAAATTATTCCAAACGAGCGGGACAGGTGGATGACTTAATTGGCCTGTGGCCGTCCTGTGACCACTCTGAGCTCCCCCTGAACAAACCAGAGTCAGTGATGCACCTTCACACCCACTAAGGGGCAGGCAAGACAGAGGACGCTGGAGTCAGAGGACTCTTAAAACCAAGGCCAGGCCAGGCCCAGCTGACAAACAGGAAGTGCACAGGTATCCAGGAGACACACCTGGTATTCAG
Seq C2 exon
ATGAGGAAGACTGAGGCCTGTTGGAAGTACAAAGCACAGACCCTGCACCCTCTGCCCCCGAGAGCTCCATGCAGGTGCCACAAGATGGAGAGGACTTTGTGGGCCAACCCTGGTACCACGGCCCCCTGTCCCGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000013857_MULTIEX1-2/2=C1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.304
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0001719=SH2=PU(9.9=34.8)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGAGACGCAGAGCCTCA
R:
GACAGGGGGCCGTGGTAC
Band lengths:
198-440
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development