BtaEX0033078 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000020351 | SLC34A1
Description
Bos taurus solute carrier family 34 (sodium phosphate), member 1 (SLC34A1), mRNA. [Source:RefSeq mRNA;Acc:NM_001103223]
Coordinates
chr7:40244421-40247603:+
Coord C1 exon
chr7:40244421-40245133
Coord A exon
chr7:40245977-40246075
Coord C2 exon
chr7:40247489-40247603
Length
99 bp
Sequences
Splice sites
3' ss Seq
CATTTCGACTTCTCTTCCAGATG
3' ss Score
9.62
5' ss Seq
TAGGTAGGG
5' ss Score
6.53
Exon sequences
Seq C1 exon
AAAAAACCCATGCAGACAGCTTTTGCAGTGGCTTTATGACCCCACTAACACATCTCTCCTCACAAGCACGCTGGGCACTCTCCAAGCTCTCTGAATCACTAAAATCCCCTCTGCTTCACTGCAAAGTGAGTCACACACTTTGATCAAAAAGCGAGCTGTGGAAGGGAGTTCCTCGGCCCGTGGTGATCCTTGCTTACTGAAATCCCCGCCACCTGCCTGCAGCTGCATTCGGCCAGTCTCCCTTTGCAGGATGCAAACGGGGCCCTCACCTGATGGAACTCTTAGTGATGCTGGTGAGGCGGACATGGTCCACCTGGAACTTGAGGTCCAGTGACCAGAAGCAAACTGCCCAGTTCCCTGTCTTCACATGTTCCTCCATGGCTCCTGCTACCACTCGCCCGTGCACTGGTTTCTCAACCCAGCCCTCCTGGGGAAACCTTTCCTTGACAGCAGGGTCCAGATAGAATTTCCTTGGCCTGGAGAGTGGCAGAGGGTGTGAG
Seq A exon
ATGTATATCCCACCATATGTGTCCATTGCCCACTCTGACTATCCGGCATAAATGCCAGCAGGTGACCACAGCCACTTGGAGACCTTCCAGGGGTGATAG
Seq C2 exon
GGACCCAAGGAGTCACTACCCCTTTCCAGGACCCAAGTTGTCCTTCGTGACATGGGTTTTCTGCAGCCAAGCCTGGCCCACTTTCTCCTTTCACTGACAGGATGCTGGGGGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020351-'11-17,'11-16,12-17
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.051
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
ENSBTAT00000027121fB6471
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACATGTTCCTCCATGGCTCC
R:
TTGGGTCCTGGAAAGGGGTAG
Band lengths:
172-271
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development