BtaEX0033080 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000001545 | SLC34A2
Description
solute carrier family 34 (type II sodium/phosphate cotransporter), member 2 [Source:HGNC Symbol;Acc:HGNC:11020]
Coordinates
chr6:46724553-46735753:+
Coord C1 exon
chr6:46724553-46724591
Coord A exon
chr6:46724680-46724740
Coord C2 exon
chr6:46735639-46735753
Length
61 bp
Sequences
Splice sites
3' ss Seq
TTTTAATTTACTTCTTTTAGATC
3' ss Score
8.85
5' ss Seq
AAAGTAACT
5' ss Score
4.33
Exon sequences
Seq C1 exon
GGTGCCTGCTCCGGTTCATTACCTGCGTAGAGAGTGCCA
Seq A exon
ATCTCCCTCGATCCTGATTTCAAGGAACTTGGCTGTCTTTGGGCTACAGAAGACGGGAAAA
Seq C2 exon
ACCATGGCTCCTTGGCCTGAGTTGGAAAATAGCCAGCCTACCTCAGAGAAATACACTGTAAAGGCCGATGGTGAGCAGTCTGCCAAGCCTGAGAAAGCTAAGGAGACTGAAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000001545_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=1.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTGCTCCGGTTCATTACCTG
R:
TAGCTTTCTCAGGCTTGGCAG
Band lengths:
135-196
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development