BtaEX0033333 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000002348 | SLC4A4
Description
Bos taurus solute carrier family 4, sodium bicarbonate cotransporter, member 4 (SLC4A4), mRNA. [Source:RefSeq mRNA;Acc:NM_174605]
Coordinates
chr6:88442696-88443881:+
Coord C1 exon
chr6:88442696-88442850
Coord A exon
chr6:88443305-88443450
Coord C2 exon
chr6:88443768-88443881
Length
146 bp
Sequences
Splice sites
3' ss Seq
TTTTTTTTGGCTCTAACTAGAAC
3' ss Score
8.05
5' ss Seq
ACGGTAAAG
5' ss Score
7
Exon sequences
Seq C1 exon
GTGTTCCATGACATTGCTTATAAAGCGAAAGATAGGCAGGACCTGATTGCTGGCATAGATGAGTTCCTAGACGAAGTCATTGTCCTTCCACCTGGAGAATGGGATCCAGCGATCAGGATAGAGCCTCCTAAGAGTCTTCCATCGTCTGACAAAAG
Seq A exon
AACACTTTAAAGTTGTCTGCTTCCCTGGTAAAGAGTCTGCCTGGAATGCAGGAGACCCTGGTTCAATTCTTGGGTCAGGAAGATCTCCTGGAGAAGGGATAGTCTACCCACTCCAGTATTCACGGGATTCCCTGGTGGCTCAGACG
Seq C2 exon
AAAGAATATGTACTCAGGTGGAGAGAATGTTCAGATGAATGGGGACACGCCCCACGATGGAGGCCATGGAGGAGGAGGACATGCAGATTGTGAGGAATTGCAGCGCACTGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000002348-'26-15,'26-14,27-15
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.197 A=0.667 C2=0.769
Domain overlap (PFAM):
C1:
PF075658=Band_3_cyto=PD(14.3=69.2)
A:
NO
C2:
PF0095516=HCO3_cotransp=PU(1.1=15.4)
Main Inclusion Isoform:
ENSBTAT00000003032fB6517
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGCGAAAGATAGGCAGGACC
R:
CTTCCAGTGCGCTGCAATTC
Band lengths:
247-393
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development