BtaEX0033345 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000004884 | SLC4A5
Description
solute carrier family 4 (sodium bicarbonate cotransporter), member 5 [Source:HGNC Symbol;Acc:HGNC:18168]
Coordinates
chr11:10327172-10361352:+
Coord C1 exon
chr11:10327172-10327301
Coord A exon
chr11:10327450-10327868
Coord C2 exon
chr11:10361192-10361352
Length
419 bp
Sequences
Splice sites
3' ss Seq
TGCCTTTCCTTGGTGTTCAGAAT
3' ss Score
7.13
5' ss Seq
AGGGTAAGG
5' ss Score
9.16
Exon sequences
Seq C1 exon
GGTCTCCAGCTGCTGAGCAGCTCCAGGACATCCTGGGGGAGGAAGATGAGGCTCCCAACCCCACCCTCTTCACAGAGATGGACACTCTGCAGCATGATGGAGACCAGATGGAGTGGAAGGAGTCGGCCAG
Seq A exon
AATTGGCGTGGACACGAAGGAGCAAACAGAGACGTAGGACTGTCTCATCCTCGAAGACATGAAAGTCCAGGTGGGAAAGTAGAACAGACGCCCGTGAAGCTATGAGAGAATAACACAAGGGCATATGTCCTTTCATGTCAAACTAAATGTTGTGAAAGGGAGAGCACCAAGCAGGCTGGGATAGATGCAAGTGCTGCCTGGAGGAAGGGGAACGTGTCCCGGGAAAACTCCAGTCGGGCGCTCCAGTGGGCACTACCAAAGGGACTTGGTAGAGTCTGCGGCAGGACAAGCAGAGTGGAGCTACAGAGGCACATGGGGATCAGAGGGAGCTGCGTGTCGGGGCGACAGAAGAGCGAGGAGAGCCAGACGGCTGGAGGGGACCCACACGGTGAAGTCACGGGAGCCAGCAGAGAACCAGG
Seq C2 exon
GTGGATAAAGTTTGAAGAAAAGGTAGAGGAAGGAGGTGAACGCTGGAGCAAGCCCCACGTGTCCACGCTGTCCTTGCACAGCCTCTTTGAGCTCCGCACCTGCCTGCAGACGGGAACCGTGCTGCTGGATTTGGATGGTGGCTCCTTACCACAGATCATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004884-'8-4,'8-3,9-4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.898 A=1.000 C2=0.109
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF075658=Band_3_cyto=PU(17.5=85.5)
Main Inclusion Isoform:
ENSBTAT00000006425fB6521
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTCTCCAGCTGCTGAGC
R:
ATCTGTGGTAAGGAGCCACCA
Band lengths:
286-705
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development