BtaEX0033912 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000000054 | SNAPC4
Description
small nuclear RNA activating complex, polypeptide 4, 190kDa [Source:HGNC Symbol;Acc:HGNC:11137]
Coordinates
chr11:103883670-103885673:-
Coord C1 exon
chr11:103885550-103885673
Coord A exon
chr11:103885063-103885199
Coord C2 exon
chr11:103883670-103884793
Length
137 bp
Sequences
Splice sites
3' ss Seq
GGGTCCATTATCTCCCCCAGGAC
3' ss Score
6.99
5' ss Seq
CATGTGCGG
5' ss Score
2.52
Exon sequences
Seq C1 exon
GGAGCCCCGGACCCCAGCCAGGGCTCTGCCCCCTCCTGCCCAGACAGCCCTGACAACCTGGACGTGCTGCAGACACGGCGCTCGAGGCACGTCCGCAAGCGGCGGCGGCTACAGTGACCGCGGG
Seq A exon
GACTTGAGCCCTTCAGGCAGGTGTAGGGTACCCCGTGACCAAGTAGGCACAGCCTGGTGGGTCTTCAAGAACTGAGACTCGAGCCCAAGAGGATATTCGCAGAAGCAAGAACTGCAGCCTCTGAGCAGCGTGGACAT
Seq C2 exon
GACTGCTCAGAGCTGGCCAGCCGATGCAGCTGACAGGCAGGGGGGCCCGTGCTGGACTCAGGCGAGCCCACCCAGGAGGGGGGCTCCGCCAGCAGTGAGCGCGTCGTCCTGGCTCGGCTGGTCCCCAAGGGCACCCAGAATGTTGGAAGAAATAAAGAAATGTCCTGTTTGTAATTAAAAGCAATCCATGGACTCCTTATGGTCTCGTCCAGTTCTGCACATGCTGGCACTTAGCCAGCTGGGCTCCGAGGTCCACGGAACAGAACCCCTGCCCCCAGGGCCTCTGGGGCCTGGGATGGGGGAGCAACAGGTCTTCCTGCTCCTGGCTCCAGGCAGAGGGCAGCCCCTACCTACCCAGGGGCTCAGGGCTCTCCTGGTGCCACCGTGGGCAGGGCAAGCCCACTTCCTCCGCCATCCAGACCACACAGGCGGGTCCCAGAACCTGTGGCTGCCCGGCTGCCCACAGGCCCCCCCCCGGCAGCCTGCACGGTGGCCACGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000000054_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
3' UTR
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=NA
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCCTCCTGCCCAGACAG
R:
TCTTCCAACATTCTGGGTGCC
Band lengths:
245-382
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development