BtaEX0034145 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000014611 | SORL1
Description
Bos taurus sortilin-related receptor, L(DLR class) A repeats containing (SORL1), mRNA. [Source:RefSeq mRNA;Acc:NM_001192757]
Coordinates
chr15:32618615-32620468:+
Coord C1 exon
chr15:32618615-32618776
Coord A exon
chr15:32619778-32619864
Coord C2 exon
chr15:32620401-32620468
Length
87 bp
Sequences
Splice sites
3' ss Seq
TCTCACTCCCTGGTCCCCAGGAA
3' ss Score
8.49
5' ss Seq
CAGGTGATT
5' ss Score
5.95
Exon sequences
Seq C1 exon
TACATTTTTACAGATGCTTATGCCCAGTACCTGTGGACCACGTTTGACTTTTGCAACACCATCCAAGGCTTCTCCATCCCATTCCGGGCAGCCGACCTCCTCCTGCACAGCAAGGCCTCCAACCTTCTCCTGGGCTTTGACAGGTCTCACCCCAACAAGCAG
Seq A exon
GAACCCTCAGTTTTTGTCTTTGGAAGTCGAGGGGCTTTTGCAGAGATCGGCAAGTCAGTTTCTCCTGGCCACACCCTGTGTATTCAG
Seq C2 exon
CTATGGAAATCAGATGACTTTGGCCAGACTTGGATCATGATTCAGGAACATGTGAAGTCTGTTTCTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000014611_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSBTAT00000019457fB6669
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TATGCCCAGTACCTGTGGACC
R:
TCCAAGTCTGGCCAAAGTCAT
Band lengths:
178-265
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development