BtaEX0034182 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000014389 | SP4
Description
Sp4 transcription factor [Source:HGNC Symbol;Acc:HGNC:11209]
Coordinates
chr4:30322869-30374648:+
Coord C1 exon
chr4:30322869-30324420
Coord A exon
chr4:30338817-30338871
Coord C2 exon
chr4:30374420-30374648
Length
55 bp
Sequences
Splice sites
3' ss Seq
TCACAGCTTTTTGTTCACAGAAG
3' ss Score
5.96
5' ss Seq
GTGGTAAGT
5' ss Score
10.36
Exon sequences
Seq C1 exon
TCAGCAGGTGCAAATTGTAGGCCAGCCTATCTTGCAACAGATCCAGATCCAGCAGCCTCAGCAACAGATAATTCAAGCTATTCCACCCCAGTCTTTTCAGCTCCAGTCAGGGCAGACGATTCAGACCATCCAGCAGCAGCCTTTGCAGAATGTTCAACTTCAAGCAGTAAATCCGACTCAGGTGCTTATCAGGGCTCCAACTTTAACACCTTCAGGGCAAATCACCTGGCAAACTGTACAGGTTCAGAATATTCAGAGTCTTTCAAATTTGCAAGTTCAGAATGCTGGGTTATCCCAGCAATTAACCATCACCCCAGTGTCTTCAAGTGGTGGCACAACCCTTGCTCAGATTGCTCCTGTGGCTGTTGCTGGTGCCCCAATAACTTTGAATACTGCCCAGCTTGCATCAGTGCCTAACCTTCAGACAGTGAGTGTTGCCAACCTGGGTGCTGCGGGCGTTCAAGTGCAAGGAGTTCCAGTTACAATCACCAGTGTGGCAG
Seq A exon
AAGCGGAGCTGCTTTTGCACAGAAGTATAGGAACCAGATAGTGATCTGTGCTGTG
Seq C2 exon
GTCAGCAGCAAGGACAAGATGGAGTGAAAGTCCAACAAGCTACCATAGCTCCTGTAACTGTAGCAGTTGGAGGAATTGCTAATGCAACGATAGGTGCTGTTAGTCCTGACCAACTCACACAAGTGCATTTGCAGCAAGGCCAGCAGGCTTCTGATCAAGAAGTGCAGCCTGGCAAGAGGCTTCGAAGAGTTGCCTGTTCCTGTCCTAATTGTAGGGAAGGAGAAGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000014389_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.492 A=0.000 C2=0.247
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSBTAT00000019135fB6672
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATACTGCCCAGCTTGCATCAG
R:
ACTCCATCTTGTCCTTGCTGC
Band lengths:
136-191
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development