BtaEX0034711 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000044129 | ST6GALNAC6
Description
Bos taurus ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1, 3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 6 (ST6GALNAC6), mRNA. [Source:RefSeq mRNA;Acc:NM_001001151]
Coordinates
chr11:98575105-98577402:-
Coord C1 exon
chr11:98577315-98577402
Coord A exon
chr11:98577037-98577186
Coord C2 exon
chr11:98575105-98575284
Length
150 bp
Sequences
Splice sites
3' ss Seq
CTCTCTTCCCTGCTGAAAAGCTC
3' ss Score
4.85
5' ss Seq
AAGGTGACT
5' ss Score
6.64
Exon sequences
Seq C1 exon
GTGTGACCACACACCCCTACCTGGGCCACCTGCAGGACACTGGCCCCTGCCCCTCAGCAGACGCCGGAGAGAGATGAAGAGCAACAAA
Seq A exon
CTCCTGATGCGTGGGAGACCCTGGTGCAAGCCTTGCTGTAGCCACTGACCTGTGTGGTCTGGGCAAGTTCCTGCCTCTGTCTGGGCCCAGGTCCACTTCTGTCCTCCTAGGCCTGACTGGTCCATCTGTGGTCAAGGATTAGCTGAGAAG
Seq C2 exon
GAGCAGCGGTCAGCAGTGTTCGTGATCCTCTTTGCCCTCATCACCATCCTCATCCTCTACAGCTCCAGCAGTGCCAATGAGGTCTTTCATTATGGCTCCCTGCGGGGCCGGACACGCCGGCCTGTCAACCTCAGGAAGTGGAGCATCACTGACGGATACATCCCCATTCTTGGCAACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000044129_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.722 A=0.067 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0077713=Glyco_transf_29=PU(14.1=63.3)
Main Inclusion Isoform:
ENSBTAT00000061027fB6772
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGACCACACACCCCTACCT
R:
TCCGTCAGTGATGCTCCACTT
Band lengths:
242-392
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development