BtaEX0035593 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000006654 | TANK
Description
TRAF family member-associated NFKB activator [Source:HGNC Symbol;Acc:HGNC:11562]
Coordinates
chr2:35277980-35300122:-
Coord C1 exon
chr2:35299975-35300122
Coord A exon
chr2:35282619-35282741
Coord C2 exon
chr2:35277980-35278088
Length
123 bp
Sequences
Splice sites
3' ss Seq
ATTTGTTTATTGCTTCATAGAAT
3' ss Score
7.43
5' ss Seq
GTGGTAAGT
5' ss Score
10.36
Exon sequences
Seq C1 exon
ATCTGTCATTTACTTCATCATTTATAGTGATGCAACAGGACATAGAGGAATGGATAAAAACATTGGCGAGCAACTCAATAAAGCTTATGAAGCCTTTCGACAGGCATGCATGGATAGAGATTCTGCAGTAAAGGAACTACAGCAGAAG
Seq A exon
AATGTTTTTGATTCAATGAAGATACCACACTGGTTTTTCAGAGAAAAAGCTTCTGAGTCTTAAATTACAGTGAACTACAAGAAGAATTGAAAAAACTGGCATAAAGCATGGGATGGTTGTGTG
Seq C2 exon
ACTGAAAACTATGAGCAGAGAATACGTGAGCAACAGGAACAGCTGTCACTTCAACAAACTATTATTGACAAGCTAACATCACAGTTACTTCTTGTGAATTCCAGTCGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000006654_MULTIEX1-2/9=C1-4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.218 A=0.000 C2=0.333
Domain overlap (PFAM):
C1:
PF125063=DUF3713=PU(34.7=78.8)
A:
NO
C2:
PF125063=DUF3713=FE(48.0=100)
Main Inclusion Isoform:
ENSBTAT00000046172fB6925
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCATCATTTATAGTGATGCAACAGGA
R:
CTCGACTGGAATTCACAAGAAGT
Band lengths:
243-366
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development