BtaEX0036251 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000019645 | TFDP1
Description
Bos taurus transcription factor Dp-1 (TFDP1), mRNA. [Source:RefSeq mRNA;Acc:NM_001076029]
Coordinates
chr12:90738265-90745686:+
Coord C1 exon
chr12:90738265-90738376
Coord A exon
chr12:90738456-90738521
Coord C2 exon
chr12:90745620-90745686
Length
66 bp
Sequences
Splice sites
3' ss Seq
CACTCCCCACCTTGTTTCAGAAT
3' ss Score
7.94
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
Exon sequences
Seq C1 exon
GCCTGGCTCATCCCTCCTCTCTCCTCCTTTTTACCAGGAAAACCATTTTTCTTTTCTGGAGGGTGACCATTACTAGCATCGATTTCACGGATCTGGTAACATGGCAAAAGAT
Seq A exon
AATGACCACCCATAAACTGCGGGCGTGTTGGTGTTCAGACCTTTCAAGCAAAGAGACAAAGTAAAG
Seq C2 exon
GCCGGTCTAATTGAAGCCAACGGGGAACTCAAGGTCTTCATAGACCAGAACCTCAGTCCTGGGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000019645_MULTIEX1-1/4=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.625 A=1.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSBTAT00000026175fB7057
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGCTCATCCCTCCTCTCTC
R:
TTTCCCAGGACTGAGGTTCTG
Band lengths:
176-242
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development