BtaEX0036257 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000006222 | TFDP2
Description
Bos taurus transcription factor Dp-2 (E2F dimerization partner 2) (TFDP2), mRNA. [Source:RefSeq mRNA;Acc:NM_001075241]
Coordinates
chr1:127894458-127978036:+
Coord C1 exon
chr1:127894458-127894524
Coord A exon
chr1:127957216-127957296
Coord C2 exon
chr1:127977933-127978036
Length
81 bp
Sequences
Splice sites
3' ss Seq
ATTTTATATTCTTTCAACAGCAC
3' ss Score
8.35
5' ss Seq
AGGGTATGG
5' ss Score
7
Exon sequences
Seq C1 exon
GTTGGTTTGAATTCCACAAATGCAGAACTAAGAGGATTTATAGATCAGAACCTCAGTCCAACCAAAG
Seq A exon
CACCAATGTTAAATTGATAAATAGCCAGGAGCACGCCGATTTCAAGACGTCCTTGCTTGTTGCAGACAGGAAAACTACAGG
Seq C2 exon
GTAACGTTTCATTCGTTGCATTTCCAGTTTCCAGCACCAACTCACCAACAAAGATTTTACCAAAAACCTTAGGACCAATAAATGTGAATGTTGGACCCCAAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000006222_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.200
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGTTTGAATTCCACAAATGCAGA
R:
CATTTGGGGTCCAACATTCACA
Band lengths:
169-250
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development