BtaEX0036260 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000006222 | TFDP2
Description
Bos taurus transcription factor Dp-2 (E2F dimerization partner 2) (TFDP2), mRNA. [Source:RefSeq mRNA;Acc:NM_001075241]
Coordinates
chr1:127977960-127982247:+
Coord C1 exon
chr1:127977960-127978036
Coord A exon
chr1:127981010-127981173
Coord C2 exon
chr1:127982126-127982247
Length
164 bp
Sequences
Splice sites
3' ss Seq
TTTTATATAATCCTTTCTAGCAT
3' ss Score
7.26
5' ss Seq
GAGGTGAGG
5' ss Score
8.41
Exon sequences
Seq C1 exon
TTTCCAGCACCAACTCACCAACAAAGATTTTACCAAAAACCTTAGGACCAATAAATGTGAATGTTGGACCCCAAATG
Seq A exon
CATATCGATGAAGAAAGAAGCTACTTTTTTTCATCATTTTAAAAGCTGGGTCTTCTGTCTCAGTTCAGTAAATGTTTACTGATTCTTTCCTATGAGTGTCTCCTAGCACTGTGGTAGGCCCTGCAAACACCCTGTACCTTTAAGGATCCTGCATTGAGATGGAG
Seq C2 exon
ATTATAAGCACACCGCAGAGACTAACCAGTTCAGGAAGTGTTCTGATTGGGAGTCCATACACCCCTGCTCCAGCAATGGTTACTCAGACACACATAGCAGAAGCTGCTGGCTGGGTCCCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000006222_MULTIEX2-2/2=C1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.231 A=0.000 C2=0.333
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSBTAT00000008169fB7060
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCCAGCACCAACTCACCAAC
R:
CTGGGACCCAGCCAGCAG
Band lengths:
197-361
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development