BtaEX0036296 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000024269 | TGFBR3
Description
transforming growth factor, beta receptor III [Source:HGNC Symbol;Acc:HGNC:11774]
Coordinates
chr3:51661004-51692620:+
Coord C1 exon
chr3:51661004-51661082
Coord A exon
chr3:51689586-51689718
Coord C2 exon
chr3:51692441-51692620
Length
133 bp
Sequences
Splice sites
3' ss Seq
TTTATTCTCCTTTGCCTTAGGAT
3' ss Score
10.55
5' ss Seq
TGTGTAAGT
5' ss Score
7.65
Exon sequences
Seq C1 exon
GGCGCTGGGCGGGGAAACTTTGCTCTGCTTTCCTGCAACTTGTGGCGGGTGGATCTCCGTTTGACACACTGCCTCCGAG
Seq A exon
GATCCTGTCACCACATTGGGGAGATTAGACAAAAACTCTCTGCAGTTTATTTTCTCTTTTGAACAAGTTACATTGTGGAGGTACTTTTAAGCTAAAAGAAGAAAAGCTCCTTCTTTGTTCGAAGCAGCAGTGT
Seq C2 exon
GCAATTTGAAAATTGGAAAGAAGGATTTTAAAGCCACTTTTGATTTGCAAAGATTGTCTATAATCTGAAGAACTACAGGCTGAGGTGACTGAATGGGACACACTTTTGGAGAAATAAAAATGACTTCTCATTGTGTGATTGTCATGTTTGCCTTAATGAGTTCCTGCTTAGCAGCCGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000024269_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGGGAAACTTTGCTCTGCTT
R:
GCTAAGCAGGAACTCATTAAGGCA
Band lengths:
242-375
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development