BtaEX0036422 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000017839 | TIAM1
Description
T-cell lymphoma invasion and metastasis 1 [Source:HGNC Symbol;Acc:HGNC:11805]
Coordinates
chr1:3483533-3552674:+
Coord C1 exon
chr1:3483533-3483699
Coord A exon
chr1:3512082-3512189
Coord C2 exon
chr1:3552497-3552674
Length
108 bp
Sequences
Splice sites
3' ss Seq
TGGTTAATCTTCCTTGGTAGGCA
3' ss Score
6.48
5' ss Seq
CTGGTACGT
5' ss Score
9.57
Exon sequences
Seq C1 exon
ACACACCCAAATGACCAGATTCATCACAGCACGAAACTTCACAAGGTAACGCCCACTCCCACCGCCTGGAGCCCGGGGAAGGCTGGCTGCTTCCTCATTTCTGTTACTGGAAGTTCTGAGAGATGGGAAGCAAGACGCGAGCGGCATGTGCGCCTCGCTGAGCGACG
Seq A exon
GCACTCAGTTTGTGGAATAAATGAATGAAGTACATATTCTGCTGTGTGGCTACTGTGTGTTGTGACGTCATTTCGTGGCCGTCTTGGTGGGGATGATCTGCTCTGCTG
Seq C2 exon
GTTTTTGGCATAGCTGCATAGACGCAGATGAGACTGTGATGGCCAGCTCCAGGGGCAGGTGCTGAGACACTTCCTAGCCACCGTCAGTGTTCATCCTGACATCATCACCAGGCTCCGTATCTAAATGCCACAGTGCTCTTGGGGCAAGTTGGGCTGGGAACCGTTGTTGCCTTGTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000017839_MULTIEX1-2/2=C1-C2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTTCACAAGGTAACGCCCAC
R:
TACGGAGCCTGGTGATGATGT
Band lengths:
251-359
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development