BtaEX0036528 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000006918 | TLK1
Description
tousled-like kinase 1 [Source:HGNC Symbol;Acc:HGNC:11841]
Coordinates
chr2:25407937-25430226:+
Coord C1 exon
chr2:25407937-25408008
Coord A exon
chr2:25409048-25409116
Coord C2 exon
chr2:25430151-25430226
Length
69 bp
Sequences
Splice sites
3' ss Seq
TCAGGCTTTCCCTTCCACAGAGA
3' ss Score
8.57
5' ss Seq
GAGGTAAGC
5' ss Score
9.85
Exon sequences
Seq C1 exon
GCCTCAACAAATAATGAAAGCTCTAATCACAGTTTTGGAAGCTTGGGATCTTTGAGTGACAAAGAATCAGAG
Seq A exon
AGACAACTGGCAGGCAGCTGAAAGGACTGTGCAAGTGACGGGACTTTATCTGCAGTAGGTTCCCTTGAG
Seq C2 exon
ACACCAGAGAAGAAACAATCAGAATCATCCAGAGGAAGAAAAAGAAAAGCAGAAAACCAGAATGAAAGTAGTCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000006918_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSBTAT00000009090fB7113
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCTCAACAAATAATGAAAGCTCT
R:
TGACTACTTTCATTCTGGTTTTCTGC
Band lengths:
146-215
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development