BtaEX0037362 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000001444 | TNXB
Description
tenascin-X precursor [Source:RefSeq peptide;Acc:NP_777128]
Coordinates
chr23:27099418-27103890:-
Coord C1 exon
chr23:27103543-27103890
Coord A exon
chr23:27101276-27101572
Coord C2 exon
chr23:27099418-27099750
Length
297 bp
Sequences
Splice sites
3' ss Seq
CTGTTTGCCTCTCTCCCCAGCCC
3' ss Score
11.13
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
Exon sequences
Seq C1 exon
CTGCAGAGGAAGAGACCCCCAGCCCCACAGAGGTGGAGGAGACCCCCAGCCCCACAGAACCCAGCACAGAGGCCCCGGAGCCCCCTGAGGAGCCCATCCTGGGGGAGCTGATGGTGACAGGATCCTCCCCAGACTCGCTGAGCCTCTCCTGGACCGTCCCCCAGGGCCACTTTGACTCCTTCACCGTCCAGTACAAGGGCAGGGACGGGCCTCAGGTGGTGCGTGTTGGGGGTGAGGAGACCGAGGTGACCGTTGAGGGCCTGGAGCCTGGACACAAGTACAAGATGAACCTGTACGGCCTGCACGGGGGGCGGCGCGTGGGCCCTGTGTCCACTGTAGCCATGACCG
Seq A exon
CCCGGGAAGAGGAGCCCCCTGCTAGCCCTCCTTTGAAGCCACAGCTGGGGGAGCTGACTGTGACAGACGCCACCCCCGACTCCCTGAGCCTCTCCTGGACCGTCCCCGAGGGCCAGTTCGACCACTTCCTAGTCCAATACAAGAATGGGGACGGGCAGCCCAAGGCGGTAAGGGTACCCGGGGACGAAGACGGGGTCACCATCTCGGGCCTGGAGCCAGACCACAAGTACAAGATGAACCTGTACGGCTTCCACGACCGCCAGCGCGTGGGCCCCGTCTCCACTGTCGGTTTAACTG
Seq C2 exon
TCTCAGAAAAAGACCAAGAAATGACTCCAGCCCCAACAGACCTGCCCACTGCAGCTCCTGAGCCTCCCATCAAGCCCCGCCTGGGGGAGCTGGCGGTGACAGACGCCACCCCCGACTCCCTGAGCCTCTCCTGGACCGTCCCTGAAGGCCAGTTCGACCACTTCCTGATCCAGTATAAGAACGGGGACGGGCAACCCAAGGCGGTGAGGGTCCCTGGGGACGAGGACGAGGTCACCATCTCAGGCCTGGAGCCAGACCACAAGTACAAGATGAACCTGTATGGCTTCCACGACCGGCAGCGTGTGGGCCCCATCTCTGTCATCGGGGTGACCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000001444-'21-30,'21-29,22-30
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.846 A=0.690 C2=0.848
Domain overlap (PFAM):
C1:
PF0004116=fn3=WD(100=68.4)
A:
PF0004116=fn3=WD(100=81.0)
C2:
PF0004116=fn3=WD(100=72.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTGTGTCCACTGTAGCCATG
R:
TGTACTTGTGGTCTGGCTCCA
Band lengths:
292-589
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development