BtaEX0037907 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000004663 | TRUB2
Description
Bos taurus TruB pseudouridine (psi) synthase homolog 2 (E. coli) (TRUB2), mRNA. [Source:RefSeq mRNA;Acc:NM_001110073]
Coordinates
chr11:98921580-98923531:-
Coord C1 exon
chr11:98923450-98923531
Coord A exon
chr11:98922716-98923218
Coord C2 exon
chr11:98921580-98921652
Length
503 bp
Sequences
Splice sites
3' ss Seq
CTTAAATGTCACCTCCCCAGGGA
3' ss Score
7.31
5' ss Seq
TAGGTGTGT
5' ss Score
4.3
Exon sequences
Seq C1 exon
GACTACACCGTGCGTGGCCTCCTGGGCAAAGCCACAGATGACTTCTGTGAGGACGGGCGGCTGGTGGAGAAGACGACGTACG
Seq A exon
GGAAGCTTCTCCAGCCCCCAGGCTCGGACCAGGTATACTGTCAGAAGTCATCGGCTAAAAAAAAAAAAAAAAAAAAGAAGTCATCAGCTGACGATCAGTGGTTTTAATGTCTGTCTCCCACCAGGATGTCACCCATGAGAGCAGGATAGTATAGTTCCACTCCCGTGGTCCCCCATGGCACTGGGCCTGGGATGTGGGAAGCGCTGGATGGATCAGTGGATGGGTGATGGATGGATGGATGGGTAGATGGATAGGTGGCTTGTTTTTCATTTCTTGCTCTCCCCATGTTCTAAACTGTCCTGTAGGATCTGTTGCATTTGCTTGTTTGACACGTTTCTGAGCATCAACATGTGCCAGTCATTGTGGGGCGCACATATGGTGAATCAGATGGGGTCCCCAGTATCAGTGATCTCACAGTCTAGCAAGGAGAGCAGACACACCGCTACGTCTTCTGGAGAAGATTAAAAACACGGCAAAGCAATGCTACGTGTTTGTACTTGTAG
Seq C2 exon
ACCACGTGACCAGAGAGAAGTTGGACCGTATCCTGGCTGTGATCCAAGGTTCCCATCAGAAGGCTCTGGTGAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004663_CASSETTE1
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.036 A=0.231 C2=0.000
Domain overlap (PFAM):
C1:
PF0084917=PseudoU_synth_2=FE(15.3=100),PF0150913=TruB_N=FE(26.7=100)
A:
PF0150913=TruB_N=PD(9.9=66.7)
C2:
PF0150913=TruB_N=FE(15.9=100)
Main Inclusion Isoform:
ENSBTAT00000064542fB7407
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development