BtaEX0039143 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000002919 | UNC5CL
Description
unc-5 homolog C (C. elegans)-like [Source:HGNC Symbol;Acc:HGNC:21203]
Coordinates
chr23:14961568-14962587:-
Coord C1 exon
chr23:14962520-14962587
Coord A exon
chr23:14962330-14962390
Coord C2 exon
chr23:14961568-14961668
Length
61 bp
Sequences
Splice sites
3' ss Seq
TAAAGAGGGCATTCTTCCAGGGG
3' ss Score
0.6
5' ss Seq
TGGGTGAAT
5' ss Score
1.2
Exon sequences
Seq C1 exon
CCAAAGACAACGAGGACTGCTCTGCGCTGACCAATGAGATCATCGTCACGATGCACACCTTCCAGGAT
Seq A exon
GGGCAGAGACTGTCTGGCCTCCAAGTGACGCTCCATCTTTGACTCTCCTGTCCATCCATGG
Seq C2 exon
GGCTTGGAGACCAAGTACATGGAAATCCTCAGGTTCCAGGCATCGGAGGAGGAATCCTGGACAGCCCCACCCCCAGTCACCCAGCCACCTGCCTGCAATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000002919-'5-6,'5-5,6-6
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.353
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSBTAT00000003791fB7595
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAAAGACAACGAGGACTGCT
R:
GGGCTGTCCAGGATTCCTCC
Band lengths:
135-196
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development