BtaEX0039846 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000006860 | VWA2
Description
von Willebrand factor A domain containing 2 [Source:HGNC Symbol;Acc:HGNC:24709]
Coordinates
chr26:35018380-35028467:+
Coord C1 exon
chr26:35018380-35018489
Coord A exon
chr26:35018581-35018631
Coord C2 exon
chr26:35028273-35028467
Length
51 bp
Sequences
Splice sites
3' ss Seq
ATCTGCTCTTGACCCCACAGAGG
3' ss Score
9.33
5' ss Seq
CGGGTAATA
5' ss Score
5.97
Exon sequences
Seq C1 exon
GTCAGGGTGGGAGCCGTCCAGTTCAGTTCCGTCCCTCGTCTGGAATTCCCCTTGGATGCGTTTTCAACCCAACAGGGAGTGAAGGGAAAAATCAAGAGGATGGTTTTCAA
Seq A exon
AGGGAGAGAGGGCTGTGGTCCGGTTTCCAGAAGCCCAGGGGTGCACGACGG
Seq C2 exon
AGGAGGGCACACAGAGACAAGCCTTGCTCTGAAATACCTTCTGCGCAAAGGATTCCCGGGGGGCAGAAATGCCTCTGTGCCCCAGGTCCTCATCATCATCACTGACGGGAGGTCCCAAGGGCATGTGGCCCTGCCCGCCAAACAGCTCAAGCAGAGGGGCATCACTGTATTCTCCGTGGGCATCCACTTCCCGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000006860_MULTIEX1-3/3=2-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.500 C2=0.045
Domain overlap (PFAM):
C1:
PF0009223=VWA=FE(20.9=100)
A:
PF0009223=VWA=FE(9.0=100)
C2:
PF0009223=VWA=FE(37.8=100)
Main Inclusion Isoform:
ENSBTAT00000009011fB7721
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCCGTCCCTCGTCTGGAATT
R:
GGAATCCTTTGCGCAGAAGGT
Band lengths:
140-191
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development