BtaEX0039889 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000021568 | VWCE
Description
von Willebrand factor C and EGF domains [Source:HGNC Symbol;Acc:HGNC:26487]
Coordinates
chr29:40491359-40494631:-
Coord C1 exon
chr29:40494538-40494631
Coord A exon
chr29:40493009-40493091
Coord C2 exon
chr29:40491359-40491446
Length
83 bp
Sequences
Splice sites
3' ss Seq
CTCCTGTTTGTCTTTCAAAGGCT
3' ss Score
9.18
5' ss Seq
CTGGTGAGC
5' ss Score
8.05
Exon sequences
Seq C1 exon
GATGGGGAGGTGACCTGTGAAAAGGTGACGTGTGAAGCTGCTTGCTCCCACCCGATTCCCTCCAGAGATGGAGGGTGCTGCCCATCGTGTACAG
Seq A exon
GCTGTTTTCACAGTGGCGTCATCCGGGCTGAAGGGGACGTTTTTTCACCTCCTAACCAAAACTGCACCGTCTGTGTCTGTCTG
Seq C2 exon
GCTGGAAATGTGTCCTGCATCTCCCCCGAGTGTCCCCCCGACCCCTGCCAGGCCTCCCCGAAGTCGGACTGCTGTACTTGCGTCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000021568-'14-15,'14-13,15-15
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0009313=VWC=PD(52.7=90.6)
A:
PF0009313=VWC=PU(47.3=92.9)
C2:
PF0009313=VWC=PD(49.1=90.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGGGGAGGTGACCTGTGAAA
R:
GCAAGTACAGCAGTCCGACTT
Band lengths:
174-257
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development