BtaEX0039894 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000021568 | VWCE
Description
von Willebrand factor C and EGF domains [Source:HGNC Symbol;Acc:HGNC:26487]
Coordinates
chr29:40496679-40497825:-
Coord C1 exon
chr29:40497709-40497825
Coord A exon
chr29:40497397-40497455
Coord C2 exon
chr29:40496679-40496807
Length
59 bp
Sequences
Splice sites
3' ss Seq
TCTCTTCCACCCTCTCCCAGATA
3' ss Score
10.57
5' ss Seq
TTGGTAAAT
5' ss Score
4.94
Exon sequences
Seq C1 exon
ACACTGATGAATGCCTTGGGACCCCCTGCCAGCAGAGATGTAAAAACAGCATTGGCAGCTACAGGTGTTCCTGTAGAACTGGCTTCCATCTCCATGGAAACCGGCACTCCTGTGTAG
Seq A exon
ATACACCCCAAGGATTCCTCTCTGCTCACCCATTTTCTTGGCTGCCTTTGCTCCCCTTG
Seq C2 exon
ATGTAAATGAGTGTCGGAGGCCCCTGGAGAGAAGAGTCTGTCACCATTCCTGCCACAACACCGTGGGCAGCTTCCTGTGCACCTGCCGACCTGGCTTCCGGCTCCGGGCTGACCGAGTGTCCTGTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000021568_CASSETTE4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0764510=EGF_CA=WD(100=95.0),PF0764510=EGF_CA=PU(0.1=0.0)
A:
NO
C2:
PF0764510=EGF_CA=WD(100=95.5)
Main Inclusion Isoform:
ENSBTAT00000028738fB7727
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGATGAATGCCTTGGGACCC
R:
GGGCCTCCGACACTCATTTAC
Band lengths:
137-196
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development