BtaEX0040663 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000004361 | ZBTB37
Description
zinc finger and BTB domain containing 37 [Source:HGNC Symbol;Acc:HGNC:28365]
Coordinates
chr16:56699565-56706787:+
Coord C1 exon
chr16:56699565-56699664
Coord A exon
chr16:56699814-56699943
Coord C2 exon
chr16:56706299-56706787
Length
130 bp
Sequences
Splice sites
3' ss Seq
TTTTGCTTGTGAGCATGCAGGAA
3' ss Score
1.41
5' ss Seq
CAGGTAATT
5' ss Score
8.55
Exon sequences
Seq C1 exon
ATTTAGCCCCTCCGGCAGTGTTGTTCCCTTGACGGAGAGACACAGAGCCAGAAGTGAGTCTCCTGGGAGAATGGATGAACCTAAGCAACCCACTTCCCAG
Seq A exon
GAAATGCACTTTTGGTGTCAGCAGAGTTTGGGAAGTAGAAAAGGATAAGATTGTGGAACTCTTTCCTGATTATAGGAGCCAGTCTGTAGCCCTAAGTGTAATAAAAATAACCTCTGAAAACTTCATGCAG
Seq C2 exon
GTAGAAGAGTCAGCAATGATGGGAGTAAGTGGCTATGTGGAGTATCTCCGAGAGCAGGAAGTATCTGAGCGGTGGTTCCGGTACAACCCCCGTCTCACCTGCATCTACTGTGCCAAATCTTTCAACCAGAAGGGGAGCCTGGACCGCCATATGCGCCTGCACATGGGGATCACACCGTTTGTCTGCCGCATGTGTGGCAAGAAATATACCCGGAAAGATCAGCTGGAGTACCACATCCGCAAACACACAGGCAACAAGCCTTTTCACTGTCATGTTTGTGGCAAAAGTTTCCCCTTTCAGGCCATCTTGAATCAGCACTTTCGCAAAAACCACCCTGGCTGTATACCCCTGGAGGGGCCTCATAGCATCTCCCCTGAAACGACTGTCACATCTCGGGGACAAGCCGAGGAAGAATCACCTTCACAAGAAGAGACAGTTGCTTCTGGGGAAACTGCCCAGGGCTCTGTGTCCACTACTGGACCAGATTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004361_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.800 C2=0.358
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF134651=zf-H2C2_2=WD(100=16.0),PF134651=zf-H2C2_2=WD(100=15.3)
Main Inclusion Isoform:
ENSBTAT00000038473fB7879
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCTTGACGGAGAGACACAGA
R:
AAACGGTGTGATCCCCATGTG
Band lengths:
255-385
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development