BtaEX0040945 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000003699 | ZFP3
Description
Bos taurus zinc finger protein 3 homolog (mouse) (ZFP3), mRNA. [Source:RefSeq mRNA;Acc:NM_001099089]
Coordinates
chr19:26878582-26888888:-
Coord C1 exon
chr19:26888803-26888888
Coord A exon
chr19:26885554-26885730
Coord C2 exon
chr19:26878582-26878629
Length
177 bp
Sequences
Splice sites
3' ss Seq
TTGCCTTCACTCTTTCCTAGAGT
3' ss Score
8.25
5' ss Seq
CAGGTGAAT
5' ss Score
6.6
Exon sequences
Seq C1 exon
CTCCTGATTTGATATTCTGGACAGTGCACTGGATTGGCTGTACCTAGATCACGTGCTCAGGCCCATCCTCAAAGGAGACTAAGAAA
Seq A exon
AGTGTGTGCGTGTCTACAAAGTCGCGTCAGTCATGTCTGACTCTTTGCAACCCTATGGGCTCCTCTGACCATGGAATTCTTCAGGCAAGAATACTGGAGTGGGTTGCCATGCCCTCCTCCAAGGATCTTCATGACACAGGGATCAAACCCACATCTCCTGTTCTCCTGGATTGGCAG
Seq C2 exon
ATGTATCCCCAGGGTAACTTCTTTTAAAAGAGATTACTGAATCAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000003699_MULTIEX1-3/3=2-C2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTGATTTGATATTCTGGACAGTGC
R:
TCTTTTAAAAGAAGTTACCCTGGGGA
Band lengths:
115-292
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development