BtaEX0040960 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000007730 | ZFX
Description
Bos taurus zinc finger protein, X-linked (ZFX), mRNA. [Source:RefSeq mRNA;Acc:NM_177490]
Coordinates
chrX:126164303-126168149:-
Coord C1 exon
chrX:126168064-126168149
Coord A exon
chrX:126166477-126166531
Coord C2 exon
chrX:126164303-126164872
Length
55 bp
Sequences
Splice sites
3' ss Seq
AATGAAACCTTTCATTACAGTTT
3' ss Score
4.51
5' ss Seq
GAGGTATGC
5' ss Score
9.12
Exon sequences
Seq C1 exon
CTGTGACTGATGAAAATTAAAGGCCATGGATGAAGATGGACTTGAATTACAACCACAAGAACCAAACTCATTTTTTGATACAACAG
Seq A exon
TTTTTCAGAACACTTCCCATATATTCCCATTTGATCATCACAACAGTCCTGTGAG
Seq C2 exon
GAGCTGATGCTACACACATGGATGGTGATCAAATTGTTGTGGAAGTACAAGAAACTGTTTTTGTTTCAGATGTTGTGGATTCAGACATAACTGTGCATAACTTTGTTCCCGATGACCCAGACTCAGTTGTAATCCAAGATGTTATCGAGGACGTTGTTATAGAAGATGTTCAGTGTCCAGATATCATGGAAGAAGCAGATGTATCTGAAACAGTCATCATTCCTGAGCAAGTGCTGGACTCAGATGTAACAGAAGAAGTGTCTTTAGCACATTGTACAGTCCCAGATGACGTCTTAGCTTCTGATATTACTTCAGCCTCAATGTCTATGCCAGAACACGTCTTGACGAGTGAGTCCATACACGTGTCTGACATTGGACACGTTGAACACGTTGTTCATGATAGCGTAGTAGAGGCAGAAATCGTCACTGATCCTCTGACAGCCGATGTAGTGTCAGAAGAAGTATTGGTAGCAGATTGTGCCTCAGAAGCAGTCATAGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000007730_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.984 A=0.263 C2=0.234
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF047048=Zfx_Zfy_act=PU(42.0=73.8)
Main Inclusion Isoform:
ENSBTAT00000034353fB7931
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCCATGGATGAAGATGGACT
R:
TCCACAACATCTGAAACAAAAACAGT
Band lengths:
144-199
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development