BtaEX0041098 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000004620 | ZNF133
Description
Bos taurus zinc finger protein 133 (ZNF133), mRNA. [Source:RefSeq mRNA;Acc:NM_001110090]
Coordinates
chr13:38708011-38717278:+
Coord C1 exon
chr13:38708011-38708109
Coord A exon
chr13:38709229-38709404
Coord C2 exon
chr13:38717152-38717278
Length
176 bp
Sequences
Splice sites
3' ss Seq
AGCCTTTTCTTCTGTGACAGGTC
3' ss Score
9.4
5' ss Seq
AAGGTGGGT
5' ss Score
8.23
Exon sequences
Seq C1 exon
TGGCCCAGCTGGTGGCTGGAGTGACCCCTTGATCCTCGCTGGTGAGTGTGGCGCTCGTGGGGCTCTAAGCTGCAGCCGTGCTCTTCCCTGCGCGGAAAG
Seq A exon
GTCCATTCCTGATGCCTTTAACGAAGAGGGAAGTCTAAGGGCGTGAGTTTCCAGTGACTCTCCTGAACCTTTCTGCTCTTGTGCTGCCCAGAGAGGAAGCCTGGTGGGCGAGGGGAGGGCTCCTGACAGCCCGGACTCACGTGGGGACTGCTCGCCTTCCGTGTGCTGAACCAAAG
Seq C2 exon
GCACACATGGCATTCAGAGATGTGGCTGTGGATTTCACCCAGGATGAGTGGGTGCTGCTGAGCCCAGCTCAGAGGTCCCTGTACCGGGAGGTGATGCTGGAGAACTACAGCAACCTGGTCTCACTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004620-'2-7,'2-1,4-7
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0135222=KRAB=WD(100=100.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGTGGCTGGAGTGACCC
R:
CCAGTGAGACCAGGTTGCTGT
Band lengths:
218-394
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development