BtaEX0041109 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000040031 | ZNF148
Description
zinc finger protein 148 [Source:HGNC Symbol;Acc:HGNC:12933]
Coordinates
chr1:70372260-70382437:-
Coord C1 exon
chr1:70382356-70382437
Coord A exon
chr1:70377514-70377612
Coord C2 exon
chr1:70372260-70372608
Length
99 bp
Sequences
Splice sites
3' ss Seq
TTATTATGTATACCTTCTAGCTT
3' ss Score
6.87
5' ss Seq
GAGGTAGGC
5' ss Score
8.99
Exon sequences
Seq C1 exon
AAGGTAGAAACTCAACCATGATTTCTTTTTCAACTCTACAGCATTCCCTTCCTTGAAGTCTTCATTTTTACATTAGTCTCAG
Seq A exon
CTTCTCTGGCAGAGGGATGGAGATGGAAGGATTAAACTTGGAAGGAGGAAAAGAATGCAGCATTTGAAGTAATCTGTTGGAGGGAGAAATTGGCCCGAG
Seq C2 exon
GCAGTTATACTTAAGCATGAACATTGACGACAAACTGGAAGGATTATTTCTTAAATGTGGCGGCATAGACGAAATGCAGTCTTCCAGGGCAATGGTTGTAATGGGTGGAGTGTCTGGCCAGTCTACCGTGTCTGGGGAACTGCAGGAATCGGTGCTTCAAGATCGGAGTATGCCTCACCAGGAGATCCTTGCTGCAGATGAAGTGTTACAAGAAAGTGAAATGAGACAACAGGATATGATATCACATGATGAACTCATGGTCCATGAGGAGACAGTGAAAAATGATGAAGAACAGATGGAAACACATGAAAGACTTCCTCAAGGACTACAGTATGCACTTAATGTCCCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000040031_MULTIEX1-1/3=C1-3
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.604
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGCATTCCCTTCCTTGAAGT
R:
TAGACTGGCCAGACACTCCAC
Band lengths:
170-269
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development