BtaEX0041119 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000006805 | ZNF180
Description
Bos taurus zinc finger protein 180 (ZNF180), mRNA. [Source:RefSeq mRNA;Acc:NM_001075644]
Coordinates
chr18:52647416-52655154:-
Coord C1 exon
chr18:52655089-52655154
Coord A exon
chr18:52651063-52651232
Coord C2 exon
chr18:52647416-52647490
Length
170 bp
Sequences
Splice sites
3' ss Seq
TTTCAATTTTCTTTGCCCAGATC
3' ss Score
7.54
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
TGCCTGGAGGAGAGTATGGAAGAGCAGGATGAGAAGCCCCAAGGGTCCCTGAAGGTCTGCGTGCAG
Seq A exon
ATCCACCAGCAGAATCACTGTCTTTGGCAGCTATGACCTTATGAAATGCATTTCTCAAATAAGACTTGAGAGTTGAAGTGATCCCTCTTCATGGGCTGCAGAATGGAAGTTGTGTTAGCTGGCATCAAAACAACATTAACCTCATTGTACATCTCCGTCAGAGCTCTCAG
Seq C2 exon
GACTCTCTGCTTCCTCAGGAGATTATCATCAAGGTTGAGGGAGAAGATGCCCGGTCACTGGCCGTCCCATCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000006805_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.500 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSBTAT00000052471fB7971
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCCTGGAGGAGAGTATGGAA
R:
GGATGGGACGGCCAGTGA
Band lengths:
138-308
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development