BtaEX0041133 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000015348 | ZNF189
Description
Bos taurus zinc finger protein 189 (ZNF189), mRNA. [Source:RefSeq mRNA;Acc:NM_001099113]
Coordinates
chr8:92752418-92762917:+
Coord C1 exon
chr8:92752418-92752502
Coord A exon
chr8:92756196-92756287
Coord C2 exon
chr8:92760209-92762917
Length
92 bp
Sequences
Splice sites
3' ss Seq
TTGTTTTGTTTTTTTCCTAGAAA
3' ss Score
8.91
5' ss Seq
CAGGTACCT
5' ss Score
8.16
Exon sequences
Seq C1 exon
GAGGAGTGGGATTATCTGGATCCAGCTCAGAGAAGCCTGTATAAAGATGTCATGATGGAGAATTATGGAAACCTGGTCTCACTGG
Seq A exon
AAAACTGAGAGAACTGCACTTTGAGGCACCTGTTTACTCTAGAAAAATTAGCTATGACCAGAGGATGGGAACATACAGTACAAGCATGGCAG
Seq C2 exon
ATGTTTTAAACAGAGATAAGGATGAGGAGCCAACTGTGAAACAAGAAATTGAGGAAATTGAGGAAGAAATGGAACCACAGGGTATAATAGTTACAAGAATCAAAAGTGAAATTGACCAGGATCCCATGCATAGAGAAACCTTTGAACTTGTTGGTAGGTTAGATAAACAAAGAGGAATCTTCTTATGGGAAATACCAAGGGAATCTTTGACCCAGGAACAAAGAATGTTCAGAGGAAACACTAACATTATCCGTAAGAGACCAAATTCAGAAGAGAAATGTCATAAATGTGAAGAATGTGGAAAGGGTTTTGTCCGCAAGGCTCATTTCATTCAACATCAAAGGGTCCATACTGGAGAGAAACCTTTCCAATGTAATGAATGTGGGAAAAGTTTTAGTCGCAGTTCATTTGTTATTGAACATCAGAGAATTCACACCGGGGAAAGGCCCTATGAGTGTAATTATTGCGGAAAAACCTTTAGTGTGAGCTCAACCCTTATT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000015348_MULTIEX1-2/2=1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.328 A=1.000 C2=0.119
Domain overlap (PFAM):
C1:
PF0135222=KRAB=FE(93.3=100)
A:
PF0135222=KRAB=PD(0.1=0.0)
C2:
PF0135222=KRAB=PD(0.1=0.0),PF134651=zf-H2C2_2=WD(100=4.5),PF134651=zf-H2C2_2=WD(100=4.2),PF134651=zf-H2C2_2=WD(100=4.5),PF134651=zf-H2C2_2=WD(100=4.4),PF134651=zf-H2C2_2=WD(100=4.5),PF134651=zf-H2C2_2=WD(100=4.4),PF134651=zf-H2C2_2=WD(100=4.5),PF134651=zf-H2C2_2=WD(100=4.4),PF097235=Zn-ribbon_8=WD(100=7.5),PF134651=zf-H2C2_2=WD(100=4.5),PF134651=zf-H2C2_2=WD(100=3.8),PF134651=zf-H2C2_2=WD(100=4.5),PF134651=zf-H2C2_2=WD(100=4.4),PF134651=zf-H2C2_2=WD(100=4.5),PF134651=zf-H2C2_2=WD(100=4.5),PF139121=zf-C2H2_6=WD(100=4.4)
Main Inclusion Isoform:
ENSBTAT00000020403fB7973
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGAGTGGGATTATCTGGATCCA
R:
ACCCTGTGGTTCCATTTCTTCC
Band lengths:
167-259
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development