BtaEX0041142 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000005572 | ZNF205
Description
Bos taurus zinc finger protein 205 (ZNF205), mRNA. [Source:RefSeq mRNA;Acc:NM_001034473]
Coordinates
chr25:2557472-2561461:+
Coord C1 exon
chr25:2557472-2557613
Coord A exon
chr25:2557781-2557855
Coord C2 exon
chr25:2561248-2561461
Length
75 bp
Sequences
Splice sites
3' ss Seq
TGGGAAATACCTTCCACCAGGGA
3' ss Score
4.18
5' ss Seq
ATGGTAAGG
5' ss Score
9.33
Exon sequences
Seq C1 exon
GCTCCTGGCCAGAAGCTGGAGGGGGCTTGGCCAACACAAGCACAAAACGACTCAACGGTGCTTTCTGGCTCTGAGATAAAAAAAAATGTCTGCAGACGACGGAGGCATCCGGGCTGCCCAGGACAAGGAGAGAGCCCGAGAG
Seq A exon
GGAATTGACTTCTATGGGACTGTTTTCCTTTGCCTGGTGAATTCATAGTCAGCAGACCAAAAGCTACATAATATG
Seq C2 exon
ACTCCAGGTCATGGGCATTCTTGTCAAGAAATGCTCTCTGAGTCAGAGGGGACAGTGCCTCTAGGAGAGGCCCGGGAGTCACCCCACATCAAGATGGAGCCAGAGGAGCCGCACCCTGAAGGGGTGTCACAGGAGACCAGAGCTGAAGGAGCGCGGGGCTGGGTGCCCCTAAGCCAGGGCACTAAGGAGAAAGTGTGTTTCCTGCCTGGAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000005572_MULTIEX1-1/2=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.632 A=0.000 C2=0.875
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSBTAT00000007323fB7976
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAAAACGACTCAACGGTGCT
R:
CTCTCCTAGAGGCACTGTCCC
Band lengths:
170-245
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development