BtaEX0041168 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000013592 | ZNF248
Description
zinc finger protein 248 [Source:HGNC Symbol;Acc:HGNC:13041]
Coordinates
chr28:13223728-13225693:+
Coord C1 exon
chr28:13223728-13223818
Coord A exon
chr28:13225417-13225562
Coord C2 exon
chr28:13225652-13225693
Length
146 bp
Sequences
Splice sites
3' ss Seq
AATAAATCTTCCCAACCTAGGGA
3' ss Score
6.48
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
Exon sequences
Seq C1 exon
GCCTTCTGCTGCTGGCTCGTCCTTCCGCGGCCTCCAGCCCCTCGTGGGAAACAATCCCTATCCTTCAGGTCCACGGGCGAGGGAGCTGCGG
Seq A exon
GGATCGAACCCAGGTCTCCAGCATTCTTTATGGACTGAGCCACCAGGGAAACCCGGTAATAAATCAGTAAGAAGCAAAAGTTTACATTCACTCGGTGAAAAGTATCAGGTCTAAGGTCAACATAAATGGGAGCCACACATGAGCAG
Seq C2 exon
CTCTCCCTCCTCCACTAAGAGTGAAAAATGAACAAATCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000013592-'1-2,'1-1,4-2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.500
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTCTGCTGCTGGCTCGTC
R:
TGGGATTTGTTCATTTTTCACTCT
Band lengths:
130-276
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development