BtaEX0041203 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000019885 | ZNF280C
Description
zinc finger protein 280C [Source:HGNC Symbol;Acc:HGNC:25955]
Coordinates
chrX:14130810-14139419:-
Coord C1 exon
chrX:14139231-14139419
Coord A exon
chrX:14138327-14138411
Coord C2 exon
chrX:14130810-14130855
Length
85 bp
Sequences
Splice sites
3' ss Seq
TTTTAATGCTATTTTAAAAGGAG
3' ss Score
4.47
5' ss Seq
TAGGTTTGT
5' ss Score
4.07
Exon sequences
Seq C1 exon
CGTCTACCCATGAGGCAGCGCGCTTAGTTATATACTTCTGCCCTCTTCTGAGGCACTCATTCCGCTCTGAGAGTCGCCGCGGGCCGTCGCTGTGGCTGCAGTCGCCGCCTAATGTTTTCGCGCTCCTCCCTTCCCTCCTCCTCTTTCTCCTCCTCCGAGTCCCAGTCAGGCTGACCTGCCCCGCTCGCG
Seq A exon
GAGAGATCGGAGAAGAAAGTGTCAAGTGAACGAACTAGCTTCTTCTACATCCAAGGAGTTCTCTTTGTTTGCAAGGATTTTTTAG
Seq C2 exon
GGCAGAAAACTAAGACCTAACTTGCTACCTTGTCTGGAGTCACATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000019885_CASSETTE4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCACTCATTCCGCTCTGAGAG
R:
TGTGACTCCAGACAAGGTAGCA
Band lengths:
181-266
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development