BtaEX0041225 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000003438 | ZNF297B
Description
Bos taurus zinc finger and BTB domain containing 43 (ZBTB43), mRNA. [Source:RefSeq mRNA;Acc:NM_001024503]
Coordinates
chr11:97600953-97608142:+
Coord C1 exon
chr11:97600953-97601099
Coord A exon
chr11:97604984-97605037
Coord C2 exon
chr11:97605347-97608142
Length
54 bp
Sequences
Splice sites
3' ss Seq
AACTCCCCTTCTTTCCACAGTTC
3' ss Score
9.95
5' ss Seq
AAGGTATTG
5' ss Score
7.76
Exon sequences
Seq C1 exon
ATTGTGGCAGGAGGAAATGGCAACTTGCTCCAGTATTCTTGCCTGGAAAATTCCATGGACAGAGGAGCCTGGTGGACTATATACATGGGACCGCAAAGTTGGACACAGCTGAAGCGACAAAGCATGGACACTCACTCTCTTAACAAG
Seq A exon
TTCTTCCTCGTGTGGATTGAATTTGAGGCCTCTTAAAAATTCTGTCAGGAAAAG
Seq C2 exon
CACCAACAAGATTTGTGATGAAATGGAGCCTGGAACAAACTCTTTTCGAGTAGAATTTCCTGATTTTTCCAGCACCATTCTGCAAAAACTGAACCAGCAGCGCCAGCAGGGACAATTATGTGATGTGTCCATTGTTGTCCAAGGCCACATTTTCCGAGCACACAAAGCTGTTCTTGCTGCCAGTTCCCCCTACTTTTGTGACCAGGTACTCCTGAAAAACAGCAGGAGGATTGTTTTGCCTGATGTGATGAATCCCAGAGTGTTTGAGAACATTCTCCTGTCGAGTTATACAGGGCGTCTAGTAATGCCTGCTCCAGAAATTGTCAGTTACTTAACAGCAGCAAGCTTCCTCCAGATGTGGCATGTGGTCGACAAATGCACTGAGGTTTTAGAAGGAAACCCTACAGTCCTTTGTCAGAAGCTAAATCATGGCAGTGACCACCAGTCTCCAAGCAGCAGCAATTACAATGGCCTGGTAGAGAGTTTTGAGCTGGGCTCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000003438-'4-6,'4-5,5-6
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0065126=BTB=WD(100=21.0),PF134651=zf-H2C2_2=WD(100=4.8),PF134651=zf-H2C2_2=WD(100=4.8)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGCGACAAAGCATGGACACT
R:
CGCTGCTGGTTCAGTTTTTGC
Band lengths:
138-192
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development