BtaEX0041228 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000007012 | ZNF3
Description
Bos taurus zinc finger protein 3 (ZNF3), mRNA. [Source:RefSeq mRNA;Acc:NM_001046614]
Coordinates
chr25:36910313-36914354:+
Coord C1 exon
chr25:36910313-36910439
Coord A exon
chr25:36911245-36911358
Coord C2 exon
chr25:36912127-36914354
Length
114 bp
Sequences
Splice sites
3' ss Seq
CTGTCTTTCCCCATGAGCAGGAT
3' ss Score
7.43
5' ss Seq
CGGGTGAGG
5' ss Score
8.48
Exon sequences
Seq C1 exon
GAACTGGTGACCTTTGAGGATGTGGCTGTGTACTTCATCCGGAAGGAGTGGAAGCGTTTGGAGCCTGCCCAGAGGGACCTCTACAGGGACGTGATGCTGGAGAATTACGGCAACGTGTTCTCCCTGG
Seq A exon
GATTCCCTTTTCTGAATTTTGACGTGATCTCTGGGCTGGATTGAGAGGAATTGCCGAGGGGCCTGGATTGGAAGGGAACTGAGAGCAGAGAGGTCCTGAGAGGCACCTGTTCGG
Seq C2 exon
ATGGTGAGACCAGAACTGAGCCTGATTCTGAAATTTCTGAAGATAGAGGATCACATGGGGTGCTGTTGGGAAGATTCCAGAAGGATATTTCTCAGGGTCTTAAGTTTGAAGAAGCCTATGAACAAGAAGTCAGTCTGAAGAGGCAGCTGGGGAGCTCCTCTGGAGAGAGACTGAATAGGAAGATGCAGGAGTTTGGTCAAGTAGCAGCTGAGGAGCAGCGAGCCCCCACAGGAGGTAGAAGTGAGAAGTGCAGCGATCTGAGGGACAGCTTCACGGTGAGCGCCAACCTCATTTCCCATCAGAGACTCCCTGTGGGGGACAGGCCCCATAAGTGTGATGAATGTAGCAAGAGCTTTAATCGAACTTCAGACCTCATTCAGCATCAGAGAATCCACACTGGGGAGAAACCCTATGAATGTAGCGAGTGTGGGAAGGCCTTCAGCCAGAGCTCACACCTTATTCAGCATCAGAGGATCCACACTGGGGAGAAACCTTACGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000007012_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.031 A=0.000 C2=0.211
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=95.3)
A:
PF0135222=KRAB=PD(0.1=0.0)
C2:
PF0135222=KRAB=PD(0.1=0.0),PF134651=zf-H2C2_2=WD(100=7.3),PF134651=zf-H2C2_2=WD(100=7.3),PF134651=zf-H2C2_2=WD(100=7.3),PF134651=zf-H2C2_2=WD(100=7.0),PF097235=Zn-ribbon_8=WD(100=12.3),PF134651=zf-H2C2_2=WD(100=7.3),PF134651=zf-H2C2_2=WD(100=7.0),PF134651=zf-H2C2_2=WD(100=7.3),PF134651=zf-H2C2_2=WD(100=7.3),PF134651=zf-H2C2_2=WD(100=4.8)
Main Inclusion Isoform:
ENSBTAT00000037194fB7990
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGCTGTGTACTTCATCCGG
R:
AGCTGCCTCTTCAGACTGACT
Band lengths:
254-368
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development