BtaEX0041241 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000005882 | ZNF333
Description
zinc finger protein 333 [Source:HGNC Symbol;Acc:HGNC:15624]
Coordinates
chr7:12182679-12191417:-
Coord C1 exon
chr7:12191153-12191417
Coord A exon
chr7:12183837-12183880
Coord C2 exon
chr7:12182679-12182802
Length
44 bp
Sequences
Splice sites
3' ss Seq
CTCCGTCTTTCTTATTGCAGGAA
3' ss Score
11.25
5' ss Seq
ATGGTGAGG
5' ss Score
7.61
Exon sequences
Seq C1 exon
GTCCGGTCAGACCCCACCCCAGACCTTAACCTTACCCCCAACCGGGGGAAAGAACCTAGAATTTCTCCTCCAAAGTCATATAAAGAGGAGTTAGCCTTTTCGTCACAGTCCGCAGCTCCTTCGGCCCTGAAAGCCAGTGTCTCGGCCACTTCCGCTGCTGGGGTCCCTGACACCGGAAGCGGAAGTGCGCCGCGGCCGCGGACGGAGGTGGCTGTGCTGGACCGCGCGGCGCCTTGCGGTGGGAGTGTCTCCGGCCAGTCTGCAG
Seq A exon
GAAGGACACACACTGAAACTTTAAACCCTGGCGCTGGTATCATG
Seq C2 exon
GAATCAGTCACCTTAGAGGATGTGGCGATGGAGCTCATCCAGGAGTGGACGTTGCTGGACGATGCTGGGAGGAACCTGTGCAGACACGTGCTGCAGGACAACTGCAGGACCCCAGCGCCCAGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000005882_CASSETTE4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.238
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0135222=KRAB=WD(100=88.1)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACACCGGAAGCGGAAGTG
R:
GATGAGCTCCATCGCCACATC
Band lengths:
136-180
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development