BtaEX0041371 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000039075 | ZNF527
Description
Bos taurus zinc finger protein 527 (ZNF527), mRNA. [Source:RefSeq mRNA;Acc:NM_001076914]
Coordinates
chr18:47582089-47585611:+
Coord C1 exon
chr18:47582089-47582157
Coord A exon
chr18:47584003-47584123
Coord C2 exon
chr18:47585537-47585611
Length
121 bp
Sequences
Splice sites
3' ss Seq
ACAACTGTCTTTGTTTTCAGAGT
3' ss Score
10.54
5' ss Seq
AAGGTAACA
5' ss Score
8.92
Exon sequences
Seq C1 exon
GGATTCTGGGAGGCGACGTCGCAGGTCTCGGGTCGCTGGGCGGGTTTCCAGAGCCAGGGACACCGGGAG
Seq A exon
AGTGAAGAAATGTTGGCTCTGAGAAGACAAGGAACTTGTTTCAGGCTGTATAGTTTCTTATTGGTTTGGTGTTGAAATTTGGCATGTTTACCTCAGGCTGAATTTCTGTGGAGAAATTAAG
Seq C2 exon
GACTTTTTTCTCCAAAAGAGAAAATTGAAGAAGGAAGGAAGAATGGCTGTTGGACTCTGTAAAGCCATGTCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000039075_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGATTCTGGGAGGCGACGTC
R:
GGGACATGGCTTTACAGAGTCC
Band lengths:
142-263
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development