BtaEX0041372 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000039075 | ZNF527
Description
Bos taurus zinc finger protein 527 (ZNF527), mRNA. [Source:RefSeq mRNA;Acc:NM_001076914]
Coordinates
chr18:47588196-47596795:+
Coord C1 exon
chr18:47588196-47588291
Coord A exon
chr18:47592154-47592340
Coord C2 exon
chr18:47594720-47596795
Length
187 bp
Sequences
Splice sites
3' ss Seq
GCTTTCTTGATATTTTTCAGACT
3' ss Score
8.21
5' ss Seq
CAGGCAAGT
5' ss Score
3.1
Exon sequences
Seq C1 exon
GACTCTCCATTTCTAAGCCCAACATGATCTCCTTATTGGAACAAGGGAAGGAACCTTGGATGGTGGAGAGAGAGATGTCGGATGGTCAACATGCAG
Seq A exon
ACTGGGAGTCTTGGTATGAGATCAAGGCATTATCTCCAAAGTGGTACACTGATGAAGAGGAAATATCACAGGGGGTGATAACAAAAAGACTTACAAGTTATAGCCTTGAATTCTCCAGTTTCAGAGAAGCCTGGAAATATGAGGCTGAATTTGAGCGGCATCAAGGAAATCAGGAGAGGCATTTCAG
Seq C2 exon
TTGAGGAACTACGATCCCACATGCCATGAGACAGCTAAGTCAGCATACCTCAACTGGAGAGCCTGCATGCTGTGACTATGAAACCCATGCCTCTGGAGCCTGTGCACCACAATGAAAGATCCCACATGTCACAATAAAAAAATTTTTTTTAAATTTATTTTTGGCTACACTGGGTCTTCATTGCTGTGTGAGGGCTTTCTCTAGTTGCAGCAAGTGGCTACTCTTTGTCGAGGTGCTTGGGCTTATTGCAATGGCCTCACTTATTGCCAAGCACGGGCTCTAGGTGTGTGGGCTTCAGTAGTTGTGGCACAGGGGCTTAATCGCTTTGAGGCGTGTGGAATCTTCCTGGGGCAGGGATGGAACCCATGTCCCCTGCATTGGCAGGTGGATTCATTGTTGTCATTGTTTTCAGGCAGGAGAATTTTTATCCACTGCACCAGCAAGGAACTCAAATGAAATACTTTATAAAAATAAAGATTGGTCAGCTAAGAGAATAATGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000039075_CASSETTE2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=0.121 A=0.038 C2=NA
Domain overlap (PFAM):
C1:
NO
A:
PF134651=zf-H2C2_2=WD(100=4.0),PF134651=zf-H2C2_2=WD(100=4.8),PF134651=zf-H2C2_2=WD(100=5.0),PF134651=zf-H2C2_2=WD(100=4.8),PF134651=zf-H2C2_2=WD(100=5.0),PF134651=zf-H2C2_2=WD(100=5.0),PF134651=zf-H2C2_2=WD(100=5.0),PF134651=zf-H2C2_2=WD(100=5.0),PF134651=zf-H2C2_2=WD(100=5.0),PF097235=Zn-ribbon_8=WD(100=8.4),PF134651=zf-H2C2_2=WD(100=5.0),PF134651=zf-H2C2_2=WD(100=5.0)
C2:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGGAAGGAACCTTGGATGGT
R:
AGCCCTCACACAGCAATGAAG
Band lengths:
249-436
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development