BtaEX0041390 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000030929 | ZNF558
Description
zinc finger protein 558 [Source:HGNC Symbol;Acc:HGNC:26422]
Coordinates
chr7:17219577-17228513:+
Coord C1 exon
chr7:17219577-17219665
Coord A exon
chr7:17220539-17220665
Coord C2 exon
chr7:17228418-17228513
Length
127 bp
Sequences
Splice sites
3' ss Seq
CGGTGTTTATGGTGGTTTAGGAC
3' ss Score
6.37
5' ss Seq
TTGGTAAGC
5' ss Score
8.72
Exon sequences
Seq C1 exon
CTCAGTCGTCCCTGTACACAGCCCCTCACCAGAAAGGATACGCAGAGAAGGAAGGGTTGGCCCGTGGCTTCCTGACAGACTGGTTACAG
Seq A exon
GACTTGGTGACTTTTGAGGACGTGACCGTGGAGTTCACCCAGGAGGAGTGGGCACTGCTAGACTCTTCTCAGCGAAAACTGTATAGAGACGTGATGCTGGAGAACTGCAGGAACCTGGCATCGCTTG
Seq C2 exon
GATATCATGTTGATAAACCCAGTCTGATCTCTCAGTTGGAGCAAGAAGACAAGGTGGTGACAGAGGAAGGAGGAATTCTCCCAGGCACCCGTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000030929_MULTIEX1-2/2=1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.200
Domain overlap (PFAM):
C1:
NO
A:
PF0135222=KRAB=WD(100=95.3)
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAGTCGTCCCTGTACACAGC
R:
GGGTGCCTGGGAGAATTCCTC
Band lengths:
178-305
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development