BtaEX0041394 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000009521 | ZNF565
Description
Bos taurus zinc finger protein 565 (ZNF565), mRNA. [Source:RefSeq mRNA;Acc:NM_001102216]
Coordinates
chr18:47031188-47044484:-
Coord C1 exon
chr18:47044444-47044484
Coord A exon
chr18:47036277-47036368
Coord C2 exon
chr18:47031188-47031261
Length
92 bp
Sequences
Splice sites
3' ss Seq
ATTTCTTTTTCTATGTATAGAAG
3' ss Score
5.99
5' ss Seq
TAGGTGAGT
5' ss Score
8.83
Exon sequences
Seq C1 exon
AGCTCCGCAGGGACCCGGACGCGACCAAGGGAAGGCAGAAG
Seq A exon
AAGTTGCTTCTGGATATTAGGTGTGAATTCTTTTTAGAACAAGGAAGACATCCTGGGCTGAGGAGAGAGACTGACAAAAGGCCTGTGCATAG
Seq C2 exon
GACTTTTCACTTGTTCAACAGAAGAATCTAAAGAAATCCAAGCAGGACAGGTGGTTCTAAAAGCCATGATCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000009521_MULTIEX1-1/2=C1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACGCGACCAAGGGAAGG
R:
TGGATCATGGCTTTTAGAACCACC
Band lengths:
97-189
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development