BtaEX0041403 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000002398 | ZNF567
Description
zinc finger protein 567 [Source:HGNC Symbol;Acc:HGNC:28696]
Coordinates
chr18:47095596-47118008:-
Coord C1 exon
chr18:47117908-47118008
Coord A exon
chr18:47115852-47115925
Coord C2 exon
chr18:47095596-47095722
Length
74 bp
Sequences
Splice sites
3' ss Seq
TGTTGCTTTTGCCTTCTTAGGAA
3' ss Score
10.52
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
Exon sequences
Seq C1 exon
GGTTGATAGTCTTCAGCTGGAATGGATTGGGAGCTGAAAAAGAGAAATCATAAGTCAAGGACAAAAACAGGCTAACATGACTGGTACCATTATAATATAGT
Seq A exon
GAACCACCCCTTTTCTAAAGAAGAGCCCAAAGGAAGACTGGTCATCTCTTGTAAATCTCAAAACCATGGCTCAG
Seq C2 exon
GGATCAGTGTCATTCAAAGATGTGACTGTGGACTTCAGTCAGGAGGAGTGGCAGCACCTGGATCCTGCTCAGAAGACACTCTACATGGATGTAATGTTGGAAAACTATTGCCATCTCATTTCTGTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000002398-'0-9,'0-4,2-9
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF0135222=KRAB=WD(100=95.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGCTGGAATGGATTGGGAGC
R:
AGTGTCTTCTGAGCAGGATCCA
Band lengths:
168-242
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development