BtaEX0041413 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000004939 | ZNF569
Description
zinc finger protein 569 [Source:HGNC Symbol;Acc:HGNC:24737]
Coordinates
chr18:47619376-47629644:-
Coord C1 exon
chr18:47629549-47629644
Coord A exon
chr18:47624011-47624095
Coord C2 exon
chr18:47619376-47621195
Length
85 bp
Sequences
Splice sites
3' ss Seq
TTCATTTCCTTTATTCTCAGTCT
3' ss Score
7.12
5' ss Seq
TTGGTATGT
5' ss Score
7.12
Exon sequences
Seq C1 exon
GATGTCCATTCACCAAACCTGATGTGATTTTCAAGTTGGAGCAAGAAGAAGAACCATGGGTCATGGAGGAAGAAGTGTTAAAGAAACATTGTCCAG
Seq A exon
TCTGGCAGAGAGGAAAATGGAGATTATTTTTTCCTCCCTATTTTTGAGCTAAGCAGCCACTACGGACTGGAAGTCTTACCCTTTG
Seq C2 exon
GAGAAATATGGGGGATGGATGAGCAGCTGAAAATTCAGGACAGACTTTTGACACAACTTGAAGATAAATTCACAAAAACACTGACTGATGAAAAAGTCAGTGAATGTCATAAGAAATTTGCAAATGCATTTCCTCTGAACTCAGACTTTTTTCCTTCCAGTCACAGTGTCTATGAATATGACTTATTTGGAAAATGTTTAGAACATAATAATTTGAACTATTGTGAGAGAATCTTTATAGGAAGAGAAGACTGTGAATATAAGGAGCCTATGAAATCATTTGGCAATAGCTTATCCCATCTTGTAGTAACCCCCTTTAAGTGTAATCATTGTGGAAAAGGTTTTGATCAAACTTTGGACCTCATCAGACACTTGAGAATTCATACTGGAGAGAAACCCTATGAATGTAAAAAATGTAGAAAAGCTTTTGGTCACAAGGAAAAACTGATTAAACATCATAAAATTCACAGTAGGGAGCAGTCTTATGAATGTAATGAATGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004939_MULTIEX1-3/3=2-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion (Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.010
Domain overlap (PFAM):
C1:
PF0135222=KRAB=PD(0.1=0.0)
A:
NO
C2:
PF134651=zf-H2C2_2=WD(100=3.5),PF134651=zf-H2C2_2=WD(100=4.3),PF134651=zf-H2C2_2=WD(100=4.3),PF134651=zf-H2C2_2=WD(100=4.3),PF134651=zf-H2C2_2=WD(100=4.3),PF134651=zf-H2C2_2=WD(100=4.3),PF134651=zf-H2C2_2=WD(100=4.3),PF134651=zf-H2C2_2=WD(100=4.3),PF134651=zf-H2C2_2=WD(100=4.3),PF134651=zf-H2C2_2=WD(100=4.3),PF134651=zf-H2C2_2=WD(100=4.3),PF134651=zf-H2C2_2=WD(100=4.3),PF134651=zf-H2C2_2=WD(100=4.3),PF134651=zf-H2C2_2=WD(100=4.3),PF134651=zf-H2C2_2=WD(100=4.3),PF134651=zf-H2C2_2=WD(100=4.3),PF134651=zf-H2C2_2=WD(100=4.3),PF134651=zf-H2C2_2=WD(100=4.3)
Main Inclusion Isoform:
ENSBTAT00000031518fB8029
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGGTCATGGAGGAAGAAGTGT
R:
TGAGTTCAGAGGAAATGCATTTGC
Band lengths:
183-268
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development