BtaEX0041428 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000005240 | ZNF605
Description
zinc finger protein 605 [Source:HGNC Symbol;Acc:HGNC:28068]
Coordinates
chr17:44989013-44991182:-
Coord C1 exon
chr17:44991061-44991182
Coord A exon
chr17:44990044-44990279
Coord C2 exon
chr17:44989013-44989173
Length
236 bp
Sequences
Splice sites
3' ss Seq
CTTTTTGTTCACCCTCACAGACT
3' ss Score
9.27
5' ss Seq
AGGGTACAT
5' ss Score
3.77
Exon sequences
Seq C1 exon
GTGTACCCTCATGAAGGAAATCACATCCCTGTGTGACCCCGCCCCTGTGGCGTCCTTGGCTCTGATCTGGTGTCTGGCTGATGTCAGTGACCTGGCTCATGAGTGGTGGAGAAATTGAAAGT
Seq A exon
ACTCTGAGCTGGATCACCCTAAAGGTGTTATCTGTCTACTCTCCTGCTCCAGTAATTGTATTAGAGAAGGGCTGAGACCAGGCCTTGGAAGCAGAGGGGAGGGAAGGGGCCCCAGGGCCAGCAGTGTTGACCTCAGAACCATTGGATAGCCCCATATCACCCCCTCTGCAAGCAGCTCTTCTGAGCAGGGACCAGAGACCTTAGAAAGAAGCAGGCTGTGGAGCAGTTTCTCTAGG
Seq C2 exon
GCCATGGGTCTCAGGATCAAGACTTGTGTGAGATAAGAAAGAAGAGGCCTCAGGACTTGGGGTGCATTCCTATCTTTGACCAGAGGTTCAGAGTATCAGGACAGAGAGAAGTCACAGAGAGAGCAGATTTTCCAGAACTGGGGAAGATGATGAAGTCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000005240_MULTIEX1-1/2=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCATGAAGGAAATCACATCCCTGT
R:
CTGTGACTTCATCATCTTCCCCA
Band lengths:
276-512
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development